Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0746 ATGTCCAAACTACCCCTCTTCATGCTGAAATTTCCTTTTCATTTCCTCTTATTGCTCAGTGTCATAGTACCCTTTCAAGTATTTTCACAATCAGAAAATACCGAACAAACAGTCCTACTCTCCCTCAAACGTGAATTGGGGGACCCACCGTCGCTCCGATCATGGGAACCGTCACCGTCGGCGCCGTGCGACTGGGCGGAGATTCGCTGCGATAACGGCTCCGTCACGAGGCTCCTCCTCTCCCGCAAAAACATCACCACCAACACCAAGAACCTCTCTTCCACAATCTGCAACCTCAAACACCTCTTCAAGCTCGACCTCTCCAGCAACTTCATCTCCGGCGAGTTCCCGACAACGCTGTACAACTGCTCCGACCTCCGGCACCTCGACCTGTCGGACAACTACCTCGCCGGACAAATTCCCGCCGACGTCGACCGCCTCAAAACGCTCACTCACCTTAACCTCGGCAGCAACTACTTCTCCGGCGAGATCATGCCGTCGATCGGAAACCTGCCGGAGCTGCAAACTCTCCTCCTCTACAAAAACAACTTCAACGGAACCATCCGCGGGGAAATCGGAAACTTGTCCAATCTCGAAATCTTGGGTTTGGCTTATAACCCAAAGCTCAAAGGCGCGAAAATCCCGTTGGAGTTTGCCAAGTTAAGAAAACTGAGGATCATGTGGATGACGCAGTGTAACTTGATCGGAGAGATTCCAGAATATTTCGGGAATATTCTCACGAATCTGGAACGGTTGGATTTGTCGAGGAACAATCTAACAGGGAGCATTCCTCGGAGTTTGTTCTCGCTGAAGAAGTTGAAGTTCTTATACTTGTACTATAACAGTTTGTCGGGTGTAATACCTAGTCCTACGATGCAGGGTTTGAATTTAACCGAACTTGATTTCTCTAAGAACAATTTGACGGGTTCCATACCCGGAGAGCTTGGAAACTTGAAGAGTTTGGTTACCTTGCACTTGTATTCGAATTACTTGTCTGGTGAGATTCCAACAAGTTTAAGCCTACTTCCTAGTCTTGAGTATTTCAGGGTTTTCAACAATGGTTTGAGTGGAACACTGCCTCCAGATCTAGGCTTGCATTCGAGGATTGTTGCGGTTGAGGTTTCAGAGAATCATCTCAGTGGTGAGTTGCCGCAGCATTTGTGTGCAAGTGGTGCTCTCATTGGTTTTGTTGCTTTTTCTAACAATTTTAGCGGGGTTTTGCCTCAATGGATTGGGAATTGTCCTTCTCTCGACACGATTCAGGTTTTTAATAATAATTTCTCTGGGGAGGTACCTTTGGGTTTGTGGACTTCGAGGAACATTTCCTCCTTGGTTCTGAGCAACAACTCCTTTTCTGGGCCTCTTCCGAGTAAAGTATTTTGGAATACAAAAAGGATTGAGATAGCGAACAACAAGTTCTCCGGAAGGATATCTATTGGGATTACTTCGGCGGCAAATTTGGTGTATTTTGATGCGAGAAACAACATGCTTTCCGGTGAAATTCCGAGGGAATTGACGCATCTTTCTCAACTTAGTACTCTCATGCTTGATGGTAACCAACTTTCTGGTGCCCTTCCATCTGAGATTATTTCATGGAAATCACTGAGTACTATGACACTCTCAAGAAACAAACTCTCTGGCAAAATCCCTATTGCTATGACCGCTCTTCCTAGCTTGGCTTACTTGGACTTGTCCCAAAATGACATATCAGGTGAAATCCCACCTCAGTTTGATAGATTGAGGTTTGTTTTTCTCAACTTGTCTTCCAACCAAATATATGGGAAAATCTCTGATGAGTTTAATAACCACGCATTTGAAAACAGTTTCTTGAACAATCCTCATCTGTGTGCTTACAATCCAAACGTCAACCTTCCTAACTGCTTGACCAAAACCATGCCACACTCTAGCAATTCATCTTCAAAATCACTTGCCCTGATTTTGGTTGTCATCATCGTTGTGTTGTTGACCATAGCCTCCTTGGTCTTCTATATGTTGAAAACGCAATGGGGCAAACGGCACTGCAAGCATAATAAGATTGAAACGTGGAGGGTCACCTCATTCCAGAGGCTTGATCTCACGGAAATAAATTTCCTCTCAAGTTTGACAGACAATAACCTCATAGGAAGTGGAGGGTTTGGGAAAGTTTACCGGATTGCTTCAAATCGTCCAGGTGAGTATTTTGCGGTGAAGAAGATTTGGAATCGCAAGGATATGGATGGCAAGTTGGAGAAAGAGTTTATGGCTGAGGTTGAGATCCTGGGTAATATTCGGCACTCGAATATAGTGAAGCTTTTGTGTTGTTATGCTAGTGAAGACTCCAAACTTCTTGTTTATGAATACATGGAAAATCAGAGCCTGGACAAATGGCTTCATGGAAAGAAGAAAACGTCACCTTCTAGGTTGAGTTGGCCAACGAGGTTGAATATTGCCATTGGGACTGCACAAGGTCTGTGTTACATGCACCATGATTGCTCACCCCCGGTCATCCACCGAGATGTCAAGTCTAGCAATATACTGTTGGACTCAGAGTTCAGAGCTAAAATAGCAGATTTTGGTCTCGCCAAGATGTTGGCAAAGCTTGGTGAACCACACACCATGTCTGCTCTAGCAGGCTCTTTTGGCTACATTCCACCAGAATACGCCTACTCAACAAAGATTAACGAGAAGGTTGATGTATATAGCTTTGGGGTTGTGCTCTTAGAACTTGTGACAGGAAGAAATCCTAATAAAGCAGGCGACCATGCATGCAGCCTAGTTGAATGGGCGTGGGAGCATTTTAGTGAAGGGAAGAGCATTACTGATGCATTCGACGAGGATATCAAAGATCCATGTTATGCAGAACAGATGACGAGTGTCTTCAAATTAGCTCTCCTTTGCACAAGCTCGTTGCCCTCAACTAGGCCTTCCACGAAGGAGATTTTGCAAGTTCTTCATCGGTGTTGCCATTCAGGTTCTACACGTAGAAGAGTGGGAAACGAATTTAATATCACCCCTCTTCTTGGTGATACAAGGTACATCTATAGTTACAAGGAGAGTAATGCTGCAAGCAATAACTCATCTTGGTGA 3066 0.4485 MSKLPLFMLKFPFHFLLLLSVIVPFQVFSQSENTEQTVLLSLKRELGDPPSLRSWEPSPSAPCDWAEIRCDNGSVTRLLLSRKNITTNTKNLSSTICNLKHLFKLDLSSNFISGEFPTTLYNCSDLRHLDLSDNYLAGQIPADVDRLKTLTHLNLGSNYFSGEIMPSIGNLPELQTLLLYKNNFNGTIRGEIGNLSNLEILGLAYNPKLKGAKIPLEFAKLRKLRIMWMTQCNLIGEIPEYFGNILTNLERLDLSRNNLTGSIPRSLFSLKKLKFLYLYYNSLSGVIPSPTMQGLNLTELDFSKNNLTGSIPGELGNLKSLVTLHLYSNYLSGEIPTSLSLLPSLEYFRVFNNGLSGTLPPDLGLHSRIVAVEVSENHLSGELPQHLCASGALIGFVAFSNNFSGVLPQWIGNCPSLDTIQVFNNNFSGEVPLGLWTSRNISSLVLSNNSFSGPLPSKVFWNTKRIEIANNKFSGRISIGITSAANLVYFDARNNMLSGEIPRELTHLSQLSTLMLDGNQLSGALPSEIISWKSLSTMTLSRNKLSGKIPIAMTALPSLAYLDLSQNDISGEIPPQFDRLRFVFLNLSSNQIYGKISDEFNNHAFENSFLNNPHLCAYNPNVNLPNCLTKTMPHSSNSSSKSLALILVVIIVVLLTIASLVFYMLKTQWGKRHCKHNKIETWRVTSFQRLDLTEINFLSSLTDNNLIGSGGFGKVYRIASNRPGEYFAVKKIWNRKDMDGKLEKEFMAEVEILGNIRHSNIVKLLCCYASEDSKLLVYEYMENQSLDKWLHGKKKTSPSRLSWPTRLNIAIGTAQGLCYMHHDCSPPVIHRDVKSSNILLDSEFRAKIADFGLAKMLAKLGEPHTMSALAGSFGYIPPEYAYSTKINEKVDVYSFGVVLLELVTGRNPNKAGDHACSLVEWAWEHFSEGKSITDAFDEDIKDPCYAEQMTSVFKLALLCTSSLPSTRPSTKEILQVLHRCCHSGSTRRRVGNEFNITPLLGDTRYIYSYKESNAASNNSSW* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0746 1021 ProSitePatterns Protein kinases ATP-binding region signature. 707 731 IPR017441 GO:0005524
Gso6g0746 1021 SUPERFAMILY RNI-like 293 604 - -
Gso6g0746 1021 SMART serkin_6 701 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0746 1021 SMART LRR_typ_2 246 270 IPR003591 -
Gso6g0746 1021 SMART LRR_typ_2 171 195 IPR003591 -
Gso6g0746 1021 SMART LRR_typ_2 342 366 IPR003591 -
Gso6g0746 1021 SMART LRR_typ_2 508 532 IPR003591 -
Gso6g0746 1021 SMART LRR_typ_2 556 579 IPR003591 -
Gso6g0746 1021 SMART LRR_typ_2 99 123 IPR003591 -
Gso6g0746 1021 ProSiteProfiles Leucine-rich repeat profile. 248 271 IPR001611 GO:0005515
Gso6g0746 1021 PANTHER KINASE FAMILY WITH LEUCINE-RICH REPEAT DOMAIN-CONTAINING PROTEIN 16 994 - -
Gso6g0746 1021 PRINTS Leucine-rich repeat signature 249 262 - -
Gso6g0746 1021 PRINTS Leucine-rich repeat signature 556 569 - -
Gso6g0746 1021 Gene3D Phosphorylase Kinase; domain 1 680 780 - -
Gso6g0746 1021 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Gso6g0746 1021 SUPERFAMILY Protein kinase-like (PK-like) 693 977 IPR011009 -
Gso6g0746 1021 ProSitePatterns Serine/Threonine protein kinases active-site signature. 828 840 IPR008271 GO:0004672|GO:0006468
Gso6g0746 1021 ProSiteProfiles Protein kinase domain profile. 701 981 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0746 1021 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 16 994 - -
Gso6g0746 1021 Gene3D Ribonuclease Inhibitor 187 292 IPR032675 -
Gso6g0746 1021 Gene3D Ribonuclease Inhibitor 31 186 IPR032675 -
Gso6g0746 1021 Pfam Leucine rich repeat 534 592 IPR001611 GO:0005515
Gso6g0746 1021 Pfam Leucine rich repeat 231 283 IPR001611 GO:0005515
Gso6g0746 1021 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Gso6g0746 1021 SUPERFAMILY L domain-like 43 386 - -
Gso6g0746 1021 Pfam Protein kinase domain 703 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0746 1021 Gene3D Ribonuclease Inhibitor 293 548 IPR032675 -
Gso6g0746 1021 Gene3D Transferase(Phosphotransferase) domain 1 781 995 - -
Gso6g0746 1021 Gene3D Ribonuclease Inhibitor 549 647 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0746 Gso-Chr6 6898746 6903174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0746 23 1000 Receptor kinase-like Gene Family AT5G25930 53.557 0.0 1001
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Gso6g0746 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0746 - K00924 gmx:100782466 2015.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0739 4 7336311 7340246 Gso6g0746 6 6898746 6903174 GST