Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0729 ATGATGGCGGTGAGTTCAGCCTGCAAAGATGGGAGCAAGGTGGCACTGGACAACGGCAAGTACGTTAGGTACACACCTGAACAGGTGGAAGCACTGGAGAGGCTCTACCATGAATGTCCAAAACCAAGTTCTCTTCGCCGTCAACAACTCATCAGAGAGTGTCCCATTCTCTCCAACATCGAACCCAAACAGATCAAGGTTTGGTTCCAAAACCGAAGGTGCAGAGAGAAGCAGCGGAAAGAAGCGTCACGGCTGCAAGCTGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACACCTCGTCTATGAAAACAGCTTTTTCCGCCAACAGACACACAACAACAACGCTACGCTTGCCACAACAGACACAAACACAAGCTGTGAGTCGGTGGTGACGAGTGGTCAGCGGAACTTGACACCGCAGCAGCATCCACCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACGGTTGCCCTGGAGTGGCTGCACGTGCTTGCGGCCTTGTGGGTCTAGAACCTACCAGGGTTGCCGAAATCCTCAAAGATAGGCTCTCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTAAATGTGATGTCCACTGGAAATGGTGGAACTATTGAGCTGCTTTACATGCAGTTGTATGCGCCAACAACTTTGGCACCTGGTCGTGACTTCTGGTTGCTGCGTTACACATCACTTTTGGAGGACGGTAGTTTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCAGACATGCTGCCAAGCGGGTATTTGATAAGACCCTGCGAAGGAGGGGGATCCATTATTCATATTGTCGATCATATGGTTCTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTGTATGAGTCATCAATGCTGCTAGCTCAAAGGACAACTATGGCGGCCTTACGTCATTTGAGGCAAATTTCTCAAGAGGTTTCTCAGCCAAGTGTAACTGGATGGGGAAGAAGGCCTGCAGCTTTGCGTGCACTGAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCAGTCAATGGGTTTGCAGATGATGGCTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCCTCACCTAGCAAGATGATGGGAGTTAGCCTTGTCTATAACAACAATGGATTTCCTTCTGTGAGCAGTTCTGTGCTATGTGCCAAAGCATCCATGTTGCTGCAGAATGTCCCTCCAGCAATTCTTCTTAGATTCTTGCGGGAGCACCGATCAGAATGGGCAGACAGCAGTATTGATGCTTACTCAGCTGCTGCCATCAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGATCAGGAGGTTTTGGCGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGTTCATGGAGGTTATCAAGCTTGAAAACATGGGCTACTATAGGGACGACATGAGTATACCTGGTGATGTTTTCCTCTTGCAACTTTGCAGTGGAGTGGATGAGCATGCGGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATTGACGCATCTTTCTCTGATGATGCACCCATTTTACCTTCTGGTTTTCGCATCATACCTCTAGATTCTGGCACAGATGCTGCTAGTCCAAACCGTACACTTGATTTGGCTTCTGCACTTGAGGTTGGCACAACAGCAAACAAAGCAGCTAGTGACAACTCAGCTCATTCTGGGAGCACAAAGTCTGTGATGACAATAGCATTCCAGTTTGCATTCGAAGTTCACCTTCAAGAGAACATAGCAACCATGGCCAGGCAATATGTTCGTAGCATCATTGCATCTGTTCAGAGGGTTTCATTAGCACTTTCTCCTTCGCGCTTTGGTTCTCACAATGCTTTTCACTTACCACCTGGCACTCCTGAGGCACAAACACTTGCTCGATGGATCTGTAACAGCTATCGGTTCTATCTTGGGGTAGAACTTCTAAAATGTGAAGGCAGTGAGTCCATTCTCAAGTCTCTTTGGCATCACTCGGATGCAGTTTTGTGCTGCTCTTTAAAGGCATTACCCGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTTGAGACAACTTTGGTTGCACTTCAAGACATCACTCTGGAAAAGATTTTTGATGACAATGGAAAGAAAACTCTGTGCACTGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGTATCTGTTTATCCAGCATGGGAAGGCCAGTGTCCTATGAGAGAGCAGTTGCATGGAAAGTGTTAAACGAAGAAGAATCCGCCCATTGCATCTGTTTTATGTTCATCAATTGGTCCTTTGTCTAA 2538 0.4752 MMAVSSACKDGSKVALDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENSFFRQQTHNNNATLATTDTNTSCESVVTSGQRNLTPQQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSFVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEVSQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKMMGVSLVYNNNGFPSVSSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAAAIKAGPCSLPGARSGGFGGQVILPLAHTIEHEEFMEVIKLENMGYYRDDMSIPGDVFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSGTDAASPNRTLDLASALEVGTTANKAASDNSAHSGSTKSVMTIAFQFAFEVHLQENIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFHLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCTEFPQIMQQGFMCIQGGICLSSMGRPVSYERAVAWKVLNEEESAHCICFMFINWSFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0729 845 PANTHER CLASS III HD-ZIP PROTEIN CNA1 5 845 - -
Gso6g0729 845 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Gso6g0729 845 SMART START_1 168 378 IPR002913 GO:0008289
Gso6g0729 845 Coils Coil 75 109 - -
Gso6g0729 845 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Gso6g0729 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 5 845 IPR044830 GO:0003700
Gso6g0729 845 MobiDBLite consensus disorder prediction 141 163 - -
Gso6g0729 845 Pfam MEKHLA domain 704 844 IPR013978 -
Gso6g0729 845 CDD homeodomain 20 80 IPR001356 GO:0003677
Gso6g0729 845 SMART HOX_1 17 83 IPR001356 GO:0003677
Gso6g0729 845 Pfam START domain 169 377 IPR002913 GO:0008289
Gso6g0729 845 SUPERFAMILY Homeodomain-like 19 83 IPR009057 -
Gso6g0729 845 CDD START_ArGLABRA2_like 163 378 - -
Gso6g0729 845 Gene3D - 203 384 IPR023393 -
Gso6g0729 845 Gene3D - 12 86 - -
Gso6g0729 845 MobiDBLite consensus disorder prediction 141 157 - -
Gso6g0729 845 CDD bZIP 72 111 - -
Gso6g0729 845 ProSiteProfiles START domain profile. 159 387 IPR002913 GO:0008289
Gso6g0729 845 SUPERFAMILY Bet v1-like 168 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0729 Gso-Chr6 6749651 6755768 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0729 16 845 Homeobox Transcription Factor Family AT4G32880 80.096 0.0 1387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso6g0729 START 9.6e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0729 K09338 - gmx:100797291 1684.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0725 4 7169972 7176183 Gso6g0729 6 6749651 6755768 GST