Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0728 ATGGAAGCACAAGAGTTTTTCCAGAACACCTTCTGCCCCCAATTCCCCTCCGGTACCAACATCACACCCTCCAACGCCAATCCCTCCGCCGCCACCGCCGACCACTTCCTCGTCGAAGACTTCTTCGACTTCTCCAACGACGACAACGACGCCACCGCTGTCACCGACGCCACCTTCGACTCCCTCCCCACCGACGTCGACTCCCCCAACGTTACCCCCCTCGACAGCACCACCAAGAACTCCAATTTGCCCTCCTCCTCCTCCGCCGACGCCCATTTCTCCGGTGACCTCTCCGTCCCGTATGATGATCTTGCGGAATTGGAGTGGCTGTCGAAATTCGCGGAGGAATCGTTTTCGAGCGAGGATTTGCAGAAGCTGCAGCTGATATCGGGTGTGAGAGCGCAAAACGATGCTGCATCGTCTGAAACGCGTGACCCGAACCCGGTTATGTTCAACCCGCAAGTGTCGGTTCGAGGCAAGGCTAGGAGCAAGCGGACACGTGGGCCCCCATGCAACTGGACCTCTCGCCTCGTTGTCCTCTCTCCCAACACCACGTCGTCGTCTTCTAACTCCGACGCCGGTAAGAAGCCGGCGACGCCGCGGAGGAGAGAGGCTGCCTTCGCCGAAGGCGGCAGCGAGGGGCGGAAGTGCCTGCATTGCGCCACGGACAAGACCCCGCAGTGGCGGACTGGGCCCATGGGCCCAAAAACGCTCTGCAATGCGTGCGGCGTGAGGTACAAGTCGGGCCGGCTCGTCCCAGAGTACAGGCCCGCGGCGAGCCCAACGTTTGTTCTGACGAAGCACTCGAATTCGCACCGCAAGGTGCTGGAACTGCGGCGGCAAAAGGAAATGGTGAAGGTCCAGCAGCATCAGTTTCTCCAACTGCATCAACAGAACATGATGTTCGATGTGCCATCATCCAACGGTGAGGATTACTTGATCCATCAGCACGTGGGCCCCGATTACACGCACCTCATCTAG 981 0.5963 MEAQEFFQNTFCPQFPSGTNITPSNANPSAATADHFLVEDFFDFSNDDNDATAVTDATFDSLPTDVDSPNVTPLDSTTKNSNLPSSSSADAHFSGDLSVPYDDLAELEWLSKFAEESFSSEDLQKLQLISGVRAQNDAASSETRDPNPVMFNPQVSVRGKARSKRTRGPPCNWTSRLVVLSPNTTSSSSNSDAGKKPATPRRREAAFAEGGSEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVKVQQHQFLQLHQQNMMFDVPSSNGEDYLIHQHVGPDYTHLI* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0728 326 MobiDBLite consensus disorder prediction 137 210 - -
Gso6g0728 326 SMART GATA_3 211 261 IPR000679 GO:0006355|GO:0043565
Gso6g0728 326 PANTHER GATA TRANSCRIPTION FACTOR 1 326 - -
Gso6g0728 326 PIRSF Txn_fac_GATA_plant 13 307 IPR016679 GO:0003677|GO:0005634|GO:0045893
Gso6g0728 326 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Gso6g0728 326 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Gso6g0728 326 MobiDBLite consensus disorder prediction 176 195 - -
Gso6g0728 326 PANTHER GATA TRANSCRIPTION FACTOR 1 326 - -
Gso6g0728 326 CDD ZnF_GATA 216 263 IPR000679 GO:0006355|GO:0043565
Gso6g0728 326 MobiDBLite consensus disorder prediction 60 92 - -
Gso6g0728 326 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 212 275 - -
Gso6g0728 326 MobiDBLite consensus disorder prediction 196 210 - -
Gso6g0728 326 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Gso6g0728 326 Gene3D - 210 261 IPR013088 GO:0006355|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0728 Gso-Chr6 6718219 6719852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0728 36 326 C2C2-Gata Transcription Factor Family AT5G25830 50.309 3.35e-88 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso6g0728 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0728 - - gmx:100776588 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0724 4 7143433 7144961 Gso6g0728 6 6718219 6719852 GST