Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0721 ATGAGAGTTTCGACAGAAAAGTTAGAGACAGAGCCGGAGAGCAAAAAGATAAAACGCATTCGTGGCGGCGGCGGCGGGGACTCGAGCAATAAGCACCCTTTGTACCGCGGCGTGCGGATGCGGAACTGGGGGAAATGGGTGTCGGAAATCCGCGAGCCGCGGAAGAAGTCGCGGATATGGCTAGGCACATTCCCGACGCCGGAAATGGCGGCGAGGGCGCACGACGTGGCGGCTCTCAGCATCAAAGGCTCCGCCGCCATTCTCAACTTCCCTCACTTTGCCAACTCGCTCCCTCGCCCGGCTTCTCTCGCGCCGCGCGACGTTCAAGCCGCGGCGGCCAAAGCGGCGCACATGGACCCTTCTTCCCTCTCCTCCCTTGTCTCCGCAATGGACTTGTCCTCTGCCTCTGACGAGTTGAGCCAAATCATAGAGCTTCCTTCTTTGGAAAGCACCGATGATGGCTCCGTCGTCTTAGAGAAAGAGTTTGTTTTTGTTGACTCCCTTGATGCTTGGATGTATCAGCCACCCTTTGGTTTTGACACCGAACAAGACACTGGTTTCGAGGGTTTGATGTGGAATTACTAG 585 0.5658 MRVSTEKLETEPESKKIKRIRGGGGGDSSNKHPLYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGSAAILNFPHFANSLPRPASLAPRDVQAAAAKAAHMDPSSLSSLVSAMDLSSASDELSQIIELPSLESTDDGSVVLEKEFVFVDSLDAWMYQPPFGFDTEQDTGFEGLMWNY* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0721 194 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 7 177 - -
Gso6g0721 194 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Gso6g0721 194 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Gso6g0721 194 SUPERFAMILY DNA-binding domain 34 92 IPR016177 GO:0003677
Gso6g0721 194 Pfam AP2 domain 33 83 IPR001471 GO:0003700|GO:0006355
Gso6g0721 194 Gene3D AP2/ERF domain 34 92 IPR036955 GO:0003700|GO:0006355
Gso6g0721 194 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Gso6g0721 194 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Gso6g0721 194 MobiDBLite consensus disorder prediction 1 22 - -
Gso6g0721 194 MobiDBLite consensus disorder prediction 1 33 - -
Gso6g0721 194 CDD AP2 33 92 IPR001471 GO:0003700|GO:0006355
Gso6g0721 194 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 7 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0721 Gso-Chr6 6621034 6622261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0721 5 193 AP2-EREBP Transcription Factor Family AT5G11590 58.140 1.68e-70 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g0721 AP2 4.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0721 K09286 - gmx:100794316 376.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0718 4 7035430 7036605 Gso6g0721 6 6621034 6622261 GST