Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0714 ATGTGTAACACCCTCAAGTTCAACCCCTTTAAGAACCGTTTGCTAATAATGTTCATGCTGGTTCTTTCTCTCCCCTTCAATGTTCAATCCCAAGCCAAAGATAGTGAAGAACAGAACCTGGCAGAACTCCCTCAAACGGTTCATCCAAGCAAGGGAATAGTAATAGCAGTTCTCTCCACAATGTTTGCCATAACATTACTCTTACTTCTCTATGTTAAATTCTGCCGAACTATCCCTCATGAACTCCTTAGGCAAAACTCAAATCTCCAAAACTTTCAGGGCCTAACTCGATCAAGGTCTAGAGTTTCTGGGATTGACAAACAAGTAGTTGAAACACTTCCTTTCTTCAAGTTCTCTTCCCTCAAGGGTTCCAAAGAAGGCCTAGAATGCACCGTTTGTCTCTCCAAATTCGAGGACACAGAGACTCTAAGACTTCTTCCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGTTTGAAAGCCACTCTACGTGCCCTCTTTGTAGACGCAGGGTTGAAGCAGGGGACATTAAAAACCTCAACTTTTCATTAAGCTCGCGGTTCCTCCGAGTTCCTTCAAATCTCACGGAGGATCCAAACCTTGAAATCTTTGTTCACAGAGAGCCATCTCATGGAGGGTCAGCATCGATCCAAAGGTCATATTTACCCTTAGACCAGCGGTGTCGAGGATCATCGAGAAGAGGCTTTTGGGACGTGGGCAAGTGCAAGAAACAAGAACTACTGCTTATTGATGATAGCAGTTCTATTGGTGGGACAAGAAAGTGGAACAAACCGGTGCACGTGATGAATCATAAGATAGTTATCTCTAATGTTTTTACGAGGAGCAGGTGGAGTGATCTTAATGCTTCGGACCTGTTGTCATTGAACAGTGAGATGCTTAATGATGTTTGCAGTGGGAGATTCTGTTTGTGTCCTTTGGAATCCAGCGACGACAGCGGAAATTTTCATGGGATTTCGAGTTCTAATGAGGAAGAAAACTCGTTTACGGCACTGAATAGTCCTGCGGAGAAGAGGTGCATGTCTGAGAGGTTTACACAAAAGGGGAAGGAGAATAGGATCAGAGAATGTGTGACATCTAATGGGGCCAGTGAGAGGCTGTGGAAGGTTTGGTTGCCAATTGCGCGAAGAACGGTCCAATGGTTTGCGATACAAGAAAGGAATTCGGTTGAATTAGAACACAAAACCTTAGCTTCAAATGTCTGA 1233 0.4404 MCNTLKFNPFKNRLLIMFMLVLSLPFNVQSQAKDSEEQNLAELPQTVHPSKGIVIAVLSTMFAITLLLLLYVKFCRTIPHELLRQNSNLQNFQGLTRSRSRVSGIDKQVVETLPFFKFSSLKGSKEGLECTVCLSKFEDTETLRLLPKCKHAFHMNCIDKWFESHSTCPLCRRRVEAGDIKNLNFSLSSRFLRVPSNLTEDPNLEIFVHREPSHGGSASIQRSYLPLDQRCRGSSRRGFWDVGKCKKQELLLIDDSSSIGGTRKWNKPVHVMNHKIVISNVFTRSRWSDLNASDLLSLNSEMLNDVCSGRFCLCPLESSDDSGNFHGISSSNEEENSFTALNSPAEKRCMSERFTQKGKENRIRECVTSNGASERLWKVWLPIARRTVQWFAIQERNSVELEHKTLASNV* 411
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0714 410 SMART ring_2 130 171 IPR001841 -
Gso6g0714 410 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 405 - -
Gso6g0714 410 CDD RING-H2_EL5_like 129 172 - -
Gso6g0714 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 180 IPR013083 -
Gso6g0714 410 Pfam Ring finger domain 129 172 IPR001841 -
Gso6g0714 410 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Gso6g0714 410 SUPERFAMILY RING/U-box 109 176 - -
Gso6g0714 410 PANTHER RING-H2 FINGER PROTEIN ATL4J 22 405 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Gso6g0714 Gso-Chr6 6564312 6566210 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0714 39 397 C3H Transcription Factor Family AT2G20030 38.421 7.84e-68 218
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0714 K10664 - gmx:100816668 822.387
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0712 4 6986813 6987589 Gso6g0714 6 6564312 6566210 GST