Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0709 ATGGAGAGGGTCATCGGAGGGAAGTTTAAGATTGGTCGGAAAATCGGAAGCGGTTCGTTCGGAGAAATTTATATTGCATCAAATATCGATACCTCTGAGATTGTCGCCATCAAGATGGAAAGCAAGAAGACCAAGCATCCGCAGCTATTGTATGAAGCAAAGTTATATAGTATTCTTCAAGGAGAAAGTGGTGTTCCAAGTATGAAGTGGTGTGGCACAGATGGAGACAATAATGTTCTAGTTATTGATCTTTTGGGGCGGAGTCTTGAGGACTTTTTTGTCTATTGCGGGAGAAAGTTTTCATTAAAAACGGTTTTGATGTTGGCCGATCAGATGCTGACAAGAATAGAGTACATGCATTCCAAGGGATTTTTGCATAGAGACATCAAACCAGATAACTTCCTTATGGGTCTTGGGAGGAAATCAAATCAGGTTTATATTATTGATTTTGGACTAGCGAAAAGATACAGGGACCCTAACACAAATAAACATATTCCTTACAGAGAGAATAAAAGCTTAACAGGAACTGCACGTTATGCAAGTTGCAACACTCACATGGGAATTGAGCAAAGTTGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTTATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTTTGAAAGCTGCTACCAAAAAGGAAAAATATGACAATATTTGTGAGAAGAAATTATCAACTACCATTGAGATGCTTTGCAAGTCGTATCCTGCGGAGTTTGCTACTTACTTTCACTATTGCCAATCTTTGACATTTGATCAACACCCAGATTATGGATACCTGAAGCGCTTGTTCCGTGATTTGTTCAAAAGAGAAGGATATGATTCCGACTTTATATTTGACTGGACCATCCTAAAATATCAGCAGGTGCAACAGACAAATAAACAAAATCAATCATCTCCTTCAACAGCAGTGCCTAGCAGTCTAGAACCAGTAGTTATGGAAAAGCATAAAGGAGTAAATGATTCAGCTCATGTTACTGTAACAAAAATGTTGGCCAATCTTGAACGTCCAAGTGCACGTGCACGTGTGCAGCCTAAGCCATCTAATGTTCGGAATCTGGATGCCAAGAATCATACTGAGAAACATGGTGTGAACAATAGTCCATCTACTTCCTCTGCCATTCCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAGGCCCACAGGAACCTCAAACCTTGGTCGTGTATTTGGGAGTAATGCTCGTGTTTCAAGCAGCTGGATTCCTTCGCTACGCCGAATTTCTTCTGCCAAATAA 1287 0.404 MERVIGGKFKIGRKIGSGSFGEIYIASNIDTSEIVAIKMESKKTKHPQLLYEAKLYSILQGESGVPSMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLTRIEYMHSKGFLHRDIKPDNFLMGLGRKSNQVYIIDFGLAKRYRDPNTNKHIPYRENKSLTGTARYASCNTHMGIEQSCRDDLESLGYVLMYFLRGSLPWQGLKAATKKEKYDNICEKKLSTTIEMLCKSYPAEFATYFHYCQSLTFDQHPDYGYLKRLFRDLFKREGYDSDFIFDWTILKYQQVQQTNKQNQSSPSTAVPSSLEPVVMEKHKGVNDSAHVTVTKMLANLERPSARARVQPKPSNVRNLDAKNHTEKHGVNNSPSTSSAIPKSSTENVSKPERPTGTSNLGRVFGSNARVSSSWIPSLRRISSAK* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0709 428 Gene3D Transferase(Phosphotransferase) domain 1 1 339 - -
Gso6g0709 428 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0709 428 MobiDBLite consensus disorder prediction 371 428 - -
Gso6g0709 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Gso6g0709 428 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Gso6g0709 428 ProSiteProfiles Protein kinase domain profile. 9 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0709 428 SMART serkin_6 9 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0709 428 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 412 - -
Gso6g0709 428 MobiDBLite consensus disorder prediction 342 428 - -
Gso6g0709 428 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Gso6g0709 428 PANTHER CASEIN KINASE-RELATED 1 412 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0709 Gso-Chr6 6536871 6542717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0709 9 223 AGC Kinase Gene Family AT3G08720 26.484 4.44e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Gso6g0709 Pkinase 7.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0709 K08960 K08959 gmx:100792736 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0706 4 6945777 6951987 Gso6g0709 6 6536871 6542717 GST