Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0685 ATGCTTGCAGTTGCACCATATTCCCCGGCGGCCCCGCCACCACTGTCGTTGCTGTTTGACATAACTCCTCCGCCGTCACCTTCAATGTATCCGACGCCTCCAGCACCTCCAGTCACCCCGCCGCCGGAAACTTTACTCGTTCAAGATTCGCCGCCGCCATCTTCAGTCACACCACTTCCTCTCACGGAGCCGTTGTTGCCGTCTCCCTCGCCGGAATCTCTGCCACCGCCATTGCCATCGTCCACTGTTACGCCATCGCCTCCAACTCCGACCGCCGAATCTCAGCCACCGCCGTTTCCATTTGCCACAGCTCCTGCACCGACAACGTTTCCGCCGTTTGCAGTTGCACCGTCGCCTCCAACTCCAACCGCCACTTTTCCACCTGCATTGCCAGAAATGCCTCCGGCGACAGCGGCGACTGTGACTGTTCCTTCGCCGCCTCAACATCCACCATTCATGACGGAACCTACTTTGGCAACGCCGTGGTTTCCTGCGTTGCCGGCATCGGCGCCGGAAGTGAATTTTCCGTCAACAGCACGAGGTGGAAGTTTGCCGGTGGCTGTGGATGTTCAGAAGCCTTCAACATTCCACGTGTCAAGTGGTCTCATTTTTGGGCTTGTAATTGCAGCTATCGTTTTCGTCTTTGTTTTTACTGTTGGATCAGTGCTACGCTGGAATAGGAAGAAAAACAAACACAATAATCTATCCACCCCTCACTATAAGGAATCATCTCCCTCTCTTGGATCCAAGGGGTCTCATGTTATTCGAGTGTCACCAAATCCAACGCTGCCACCACCGCCACCTCTCACTGAGGGCGGTGGAGCTTCTGGCTCTTTTAATTCAGTATCTGTGAAAGCAATTCCAAATCATGCTCCAAGAGGTGCCTTTGGTCCCGCGAATGGTATTTTCACGTATGATGAATTATTAGTGGCCACTAAATGTTTCTCTGAGTCCAACCTTCTTGGAGAAGGTGGTTTTGGGTATGTGTACAAAGGAGTTCTCCCATGTGGAAAGGAAATTGCAGTTAAGCAGTTAAAATCAGGAAGCCAACAAGGAGAGAGAGAGTTTCAAGCTGAGGTTGAGACCATTAGCCGAGTGCATCATAAACATCTTGTTGAATTTGTTGGATACTGCGTTACAAGGGCAGAGAGATTGCTCGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATGGGGAGGGGAATACCTTCTTAGAATGGTCGATGAGGATTAAAATTGCCTTGGGATCTGCAAAAGGGCTGGCATATCTACACGAAGATTGTAATCCGGCAATTATTCACCGAGATATTAAAGCATCTAATATCCTTCTTGATTTTAAGTTTGAACCCAAGGTTTCTGACTTTGGCTTGGCAAAAATCTTCCCTAACAACGATAGTTGCATTAGTCACCTCACCACTCGAGTGATGGGAACCTTTGGGTATCTAGCTCCGGAGTATGCATCAAGTGGTAAATTGACAGATAAATCAGATGTATATTCCTATGGCATCATGCTTTTAGAACTTATAACCGGACATCCACCAATCACTACAGCAGGATCAAGAAATGAGAGCCTCGTCGACTGGGCTAGGCCATTGCTTGCTCAAGCACTACAAGATGGTGACTTCGACAATCTTGTTGATCCAAGGTTGCAGAAAAGTTACGAAGCTGATGAGATGGAAAGAATGATTACCTGCGCAGCTGCTTGTGTGCGCCATTCAGCCAGGCTTCGACCTCGAATGAGCCAAATAGTTGGAGCCTTAGAAGGAGTGGTTTCTCTAACCGATCTTGTTGGGGATGTTACAACAGGGCTTACCACAGACACGGTATACAATTGGTCAAATATTTTAGATTATGATGCTGGCCATTACCAGCAGGACATGAGAAATTTCAATTTGGCATTATCATGTCATAAATACAGCTCCAGCGGGTATAGTGAAACCACTAGTGCTTATGGGCTTCACTCATCAGGCTCAAGTAGTGAGGCTCAGCAATCATTTCGAGACATAGTATAA 2022 0.4777 MLAVAPYSPAAPPPLSLLFDITPPPSPSMYPTPPAPPVTPPPETLLVQDSPPPSSVTPLPLTEPLLPSPSPESLPPPLPSSTVTPSPPTPTAESQPPPFPFATAPAPTTFPPFAVAPSPPTPTATFPPALPEMPPATAATVTVPSPPQHPPFMTEPTLATPWFPALPASAPEVNFPSTARGGSLPVAVDVQKPSTFHVSSGLIFGLVIAAIVFVFVFTVGSVLRWNRKKNKHNNLSTPHYKESSPSLGSKGSHVIRVSPNPTLPPPPPLTEGGGASGSFNSVSVKAIPNHAPRGAFGPANGIFTYDELLVATKCFSESNLLGEGGFGYVYKGVLPCGKEIAVKQLKSGSQQGEREFQAEVETISRVHHKHLVEFVGYCVTRAERLLVYEFVPNNTLEFHLHGEGNTFLEWSMRIKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDFKFEPKVSDFGLAKIFPNNDSCISHLTTRVMGTFGYLAPEYASSGKLTDKSDVYSYGIMLLELITGHPPITTAGSRNESLVDWARPLLAQALQDGDFDNLVDPRLQKSYEADEMERMITCAAACVRHSARLRPRMSQIVGALEGVVSLTDLVGDVTTGLTTDTVYNWSNILDYDAGHYQQDMRNFNLALSCHKYSSSGYSETTSAYGLHSSGSSSEAQQSFRDIV* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0685 673 MobiDBLite consensus disorder prediction 231 275 - -
Gso6g0685 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK14 97 641 - -
Gso6g0685 673 MobiDBLite consensus disorder prediction 7 146 - -
Gso6g0685 673 MobiDBLite consensus disorder prediction 653 673 - -
Gso6g0685 673 MobiDBLite consensus disorder prediction 237 256 - -
Gso6g0685 673 SMART serkin_6 315 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0685 673 CDD STKc_IRAK 321 592 - -
Gso6g0685 673 SUPERFAMILY Protein kinase-like (PK-like) 298 590 IPR011009 -
Gso6g0685 673 Pfam Protein kinase domain 316 585 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0685 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672|GO:0006468
Gso6g0685 673 Gene3D Transferase(Phosphotransferase) domain 1 391 600 - -
Gso6g0685 673 ProSitePatterns Protein kinases ATP-binding region signature. 321 343 IPR017441 GO:0005524
Gso6g0685 673 MobiDBLite consensus disorder prediction 1 146 - -
Gso6g0685 673 ProSiteProfiles Protein kinase domain profile. 315 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0685 673 Gene3D Phosphorylase Kinase; domain 1 285 390 - -
Gso6g0685 673 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 97 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0685 Gso-Chr6 6335175 6341090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0685 205 664 Trihelix Transcription Factor Family AT1G70460 48.434 2.45e-136 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Gso6g0685 Pkinase 3.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0685 - - gmx:100810262 1094.72