Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0675 ATGGTATCTGTCGAAAAAATTCACATCGAAAGGGAACGAACACGGAAACGCCCTCGTCTCGCGTGGGACGTAGCTCCTCCCTCCGCGTCTGAGGCACAACGGGCTCTGCCGGTGCCCGGTGATGAAGGTTTCGAAAGAAAGCATGTTTCGCCTCCGAAAAGGGACGACGATCGAGAGGGCCATTATGTCTTCAATCTTGGCGAAAATCTCACTCCTAGATATAAAATCCTCGGCAAGATGGGTGAAGGCACATTTGGTCGGGTTTTGGAATGTTGGGACCGTCAAACCAGAGAATATGTGGCTATCAAGGTAGTTAGAAGCATACGGAAATATCGGGATGCAGCAATGCTCGAGATTGATGTGCTTCAACAACTAGCGAAGAATGATAGAGGAAGCTCGCGATGCGTGCAGATCAGAAATTGGTTTGATTACCGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGGGAATTTGGACGTCAGCTTTTGGAATCTGTAGCATATATGCATGAACTACGCCTAATCCACACTGACCTAAAGCCAGAAAATATACTTCTTGTTTCCTCTGAATATGTAAAGCTCCCTAGCTATAAGAGAATTTCCTCAGATGAAATGCAATTCAGGTGCTTGCCCAAGTCTAGTGCTATTAAGCTGATTGATTTTGGTAGTACTGCATATGATAATCAGAATCATAGCTCCATTGTTTCTACAAGGCATTACAGAGCTCCCGAGATTATTCTAGGTCTAGGATGGTCATATCCATGTGATTTGTGGAGTGTTGGATGTATTCTCATCGAACTATGCTCGGGTGAAGCATTGTTTCAGACTCATGAAAACTTGGAGCACCTGGCAATGATGGAAAGAGTTTTGGGACCTATTCCAGAGCATATGATTTGCAGGTCTAACAAGGGTGCAGAAAAATATTTCAAGCGAGGATCGCGACTAAGATGGCCTGAAGGAGCTGTTTCAAGGGAGAGCATTAGTGCAGTGAAGAAGCTTGGTCATCTTAAGGATATTGTATCACGAAATGTGGACTCTTCAAGGTCCTCCTTGACTGAATTGTTACATGGCTTATTAACATATGATCCTACCAAACGCATTACAGCTCGCCAAGCCCTCGATCATCCCTTCTTTAGGAATCCTACTTAG 1212 0.4398 MVSVEKIHIERERTRKRPRLAWDVAPPSASEAQRALPVPGDEGFERKHVSPPKRDDDREGHYVFNLGENLTPRYKILGKMGEGTFGRVLECWDRQTREYVAIKVVRSIRKYRDAAMLEIDVLQQLAKNDRGSSRCVQIRNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVAYMHELRLIHTDLKPENILLVSSEYVKLPSYKRISSDEMQFRCLPKSSAIKLIDFGSTAYDNQNHSSIVSTRHYRAPEIILGLGWSYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPIPEHMICRSNKGAEKYFKRGSRLRWPEGAVSRESISAVKKLGHLKDIVSRNVDSSRSSLTELLHGLLTYDPTKRITARQALDHPFFRNPT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0675 403 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Gso6g0675 403 Gene3D Transferase(Phosphotransferase) domain 1 128 399 - -
Gso6g0675 403 CDD PKc_CLK 61 399 - -
Gso6g0675 403 PANTHER BNAA07G37640D PROTEIN 49 400 - -
Gso6g0675 403 MobiDBLite consensus disorder prediction 18 59 - -
Gso6g0675 403 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Gso6g0675 403 MobiDBLite consensus disorder prediction 40 59 - -
Gso6g0675 403 Pfam Protein kinase domain 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0675 403 SMART serkin_6 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0675 403 ProSiteProfiles Protein kinase domain profile. 74 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0675 403 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 49 400 - -
Gso6g0675 403 SUPERFAMILY Protein kinase-like (PK-like) 61 401 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0675 Gso-Chr6 6226611 6230267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0675 73 401 Core Cell Cycle Gene Families AT3G48750 27.679 9.58e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Gso6g0675 Pkinase 7.5e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0675 K08287 - gmx:100782453 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0675 4 6576325 6580011 Gso6g0675 6 6226611 6230267 GST