Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0672 ATGCAAAAGGAAAAGGAAGCAATTGTCAAGGAGGGGACTACGGAAATAGAAATGGAAGGAACCCGTGCAAAAGAGGAAACCCTACCACCGGGATTTCGATTTCACCCTACCGATGAAGAACTTGTCACATGCTATCTGGTAAATAAGATATCGGATTCTAATTTTACAGGGAGAGCAATAACTGATGTAGATCTCAACAAATGTGAGCCATGGGAGCTGCCAGGGAAGGCAAAGATGGGAGAAAAAGAATGGTACTTCTTCAGTCTGAGAGACCGTAAATACCCAACGGGTGTGAGAACAAATCGAGCAACTAACGCCGGGTATTGGAAGACCACAGGGAAAGACAAGGAGATCTTCAACAGTGAAACATCGGAGTTGATTGGCATGAAGAAGACTTTAGTTTTCTACAAAGGCAGAGCTCCCAGAGGAGAAAAAAGCAACTGGGTCATGCATGAATATCGCATTCACTCAAAATCCAGCTATAGAACTAACAGGGATGAATGGGTGGTGTGCCGGGTATTCAAGAAAAGTGGTAATGCGAAGAAGTACCCTTCTTCCAACCATGCAAGAGCAGTGAATCCATACAGCTTGGAAATAGAACCAAATATTTTGCCTCCGCTAATGATGCAACTGGGAGATCCTGGTGCTCATTTCCTTTATGGAAGAAACTACATGAACAGTGCTGAGTTAGCAGAACTTGCTAGGGTTTTGAGAGGGGGTGGATCAACCAGTAGTGTCAACCTGCCAATTCAATCCCACTTGAGCTACCCTACATCATCATCGACAGGAGGAGGATTCACCATTTCAGGGCTCAATTTGAACCTTGGAGGAGGAGGAGCAACAGCCACAACACAACCCATTTTAAGGCCAATGCAACCTTCTCCTGCTCCTGTTCATACGATGGCTCAAGTACTTGATGCCAATTCCAGCATGATGACAACCAGTTCTCTTGGTGCTGAGAATGTAGGTTATGGAGCAGAAATGAGTAACTTGAATTTGCATGGGAATAGGTATATGGGCGTCGATCACTGCATGGATCTAGACAACTATTGGCCTTCCTACTAA 1065 0.4479 MQKEKEAIVKEGTTEIEMEGTRAKEETLPPGFRFHPTDEELVTCYLVNKISDSNFTGRAITDVDLNKCEPWELPGKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYWKTTGKDKEIFNSETSELIGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSSYRTNRDEWVVCRVFKKSGNAKKYPSSNHARAVNPYSLEIEPNILPPLMMQLGDPGAHFLYGRNYMNSAELAELARVLRGGGSTSSVNLPIQSHLSYPTSSSTGGGFTISGLNLNLGGGGATATTQPILRPMQPSPAPVHTMAQVLDANSSMMTTSSLGAENVGYGAEMSNLNLHGNRYMGVDHCMDLDNYWPSY* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0672 354 Pfam No apical meristem (NAM) protein 29 155 IPR003441 GO:0003677|GO:0006355
Gso6g0672 354 Gene3D NAC domain 37 181 IPR036093 GO:0003677|GO:0006355
Gso6g0672 354 SUPERFAMILY NAC domain 21 176 IPR036093 GO:0003677|GO:0006355
Gso6g0672 354 ProSiteProfiles NAC domain profile. 28 176 IPR003441 GO:0003677|GO:0006355
Gso6g0672 354 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 13 351 - -
Gso6g0672 354 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0672 Gso-Chr6 6205644 6208536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0672 22 354 NAC Transcription Factor Family AT2G24430 53.736 7.37e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso6g0672 NAM 2.9e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0672 - - gmx:100804931 699.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0671 4 6552711 6555659 Gso6g0672 6 6205644 6208536 GST