Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0655 ATGCAACAGAGGCTTAAGTTGCAGCAACAACAACAAGCCCTCATGCAGCAAGCTTTGCTTCAACAGCAGCAGATGTACCACCCTGGCATGCTCGCCGCTGCTATGTCTCAGATGGAGCCTGTTCCAAGTGGAAATTTGCCTCCTGGTTTTGATACGTCTGCATGCCGTAGTGTTTATGTAGGAAATATTCATGTAAATGTCACCGATAAACTTCTTGCAGAAGTTTTTCAGAGTGCTGGTCCTCTTGCTGGCTGCAAGCTCATAAGAAAAGAAAAGTCCTCGTATGGTTTTGTGGACTACCACGATCGAGCATCTGCAGCCCTTGCAATAATGACATTGCATGGACGGCAACTTTATGGTCAAGCACTTAAGGTGAATTGGGCATATGCCAATAGCAGTAGGGAGGATACGACAGGGCACTTCAATATATTTGTCGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCTTGCTTCTCAGTCTATCCTAGTTGTTCTGATGCAAGGGTTATGTGGGATCACAAAACTGGTCGGTCAAAAGGATATGGTTTTGTTTCTTTCCGTGATCATCAGGATGCCCAAAGTGCCATAAATGATATGACAGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGCAACTAAGGGTGCTGGTGGCAGCTCCAATGAAGAGAAGAACAATGACAGCCAAAATGCTGTTATGCTTACAAATGGATCTTCAGATGGAGGTCAAGATAATAACAATGAGGATGCTCCTGAAAACAATCCTTCATACACCACAGTTTATGTTGGCAACCTTCCTCATGATGTAACACAAGCTGAACTTCATTGTCAGTTCCACGCACTGGGGGCTGGGGTGATTGAGGAGGTTCGAGTTCAGAGGGATAAGGGTTTTGGATTTATCAGATACAACACTCATGACGAAGCTGCTCTGGCCATTCAGATGGCTAATGGAAGACTTGTACGTGGGAAGAATATGAAGTGTTCGTGGGGTAGTAAACCAACTCCACCTGGAACAGCTTCAAACCCACTACCTCCTCCTGCTCAACCATATCAAATACTTCCCACTGCAGGGATGAACCAAGGGTATTCTCCTGCTGAGTTGTTGGCTTATCAGCGCCAACTGGCCTTGAGTCAGGCTGCTGTATCTGGTCTTTCAGGTCAAGCTCTTCTGCAAATGACTGGACAACATGGCCTAGCTCCTGCTTCCATGGGCATAAACTCTGGGGCATCTCAAGCCATGTATGATGGATATACCGGTAATTCATCGAGACAGCAGCTTATGTACTATCGTTAA 1308 0.4572 MQQRLKLQQQQQALMQQALLQQQQMYHPGMLAAAMSQMEPVPSGNLPPGFDTSACRSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYANSSREDTTGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRDHQDAQSAINDMTGKWLGNRQIRCNWATKGAGGSSNEEKNNDSQNAVMLTNGSSDGGQDNNNEDAPENNPSYTTVYVGNLPHDVTQAELHCQFHALGAGVIEEVRVQRDKGFGFIRYNTHDEAALAIQMANGRLVRGKNMKCSWGSKPTPPGTASNPLPPPAQPYQILPTAGMNQGYSPAELLAYQRQLALSQAAVSGLSGQALLQMTGQHGLAPASMGINSGASQAMYDGYTGNSSRQQLMYYR* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0655 435 SMART rrm1_1 142 215 IPR000504 GO:0003723
Gso6g0655 435 SMART rrm1_1 57 126 IPR000504 GO:0003723
Gso6g0655 435 SMART rrm1_1 264 333 IPR000504 GO:0003723
Gso6g0655 435 PANTHER OLIGOURIDYLATE-BINDING PROTEIN 1B-LIKE ISOFORM X1 7 432 - -
Gso6g0655 435 SUPERFAMILY RNA-binding domain, RBD 252 346 IPR035979 GO:0003676
Gso6g0655 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 141 219 IPR000504 GO:0003723
Gso6g0655 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 56 130 IPR000504 GO:0003723
Gso6g0655 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 143 213 IPR000504 GO:0003723
Gso6g0655 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 58 124 IPR000504 GO:0003723
Gso6g0655 435 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Gso6g0655 435 SUPERFAMILY RNA-binding domain, RBD 41 134 IPR035979 GO:0003676
Gso6g0655 435 SUPERFAMILY RNA-binding domain, RBD 135 247 IPR035979 GO:0003676
Gso6g0655 435 CDD RRM2_PUB1 142 216 - -
Gso6g0655 435 MobiDBLite consensus disorder prediction 218 263 - -
Gso6g0655 435 CDD RRM3_TIA1_like 263 337 - -
Gso6g0655 435 Gene3D - 139 241 IPR012677 -
Gso6g0655 435 Gene3D - 1 138 IPR012677 -
Gso6g0655 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723
Gso6g0655 435 Gene3D - 242 341 IPR012677 -
Gso6g0655 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0655 Gso-Chr6 6078568 6085950 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0655 57 337 Eukaryotic Initiation Factors Gene Family AT2G23350 28.767 4.22e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0655 K13201 - gmx:100777108 843.188
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0653 4 6405606 6413221 Gso6g0655 6 6078568 6085950 GST