Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0650 ATGTATAGAATATTATCGACGCCGGCGTCGAAGTTCCGCCAGTTCCGGCGACTCCGGTCTCGACCGAAGGCAGCGACAGCGACAGCGACAGAGGAGGAGCACGCGTTCCAGATCCTATGGCGTTACCAGATCCTGGACCCCGACAGCGACATCGTGGCCTATTGGAACCGGGTGTTCCTTGTTACGAGCCTCCTCGCCCTCTTCATCGACCCTCTCTACTTCTTCCTCCCCACCGTTGGCGGCCCCGCCTGCCTCCAGGCTGATCCCAAACTCAGCATCCTCGTTACCATCCTCCGCTCCTTCGCCGACCTCTTCTACGTCCTCCACATGATCATGAAGTTTCGCACCGCCTTCGTCGCCCCCAACTCTCGAATCTTCGGCCGCGGCGAGCTCGTCATGGACGCCCGCGAAATCGCCATGCGCTACTTGAAGTCTGATTTCGTCATTGACCTTGCTGCCACCATCCCTCTCCCCCAGATTGTTATTTGGTTGGTGATTCCTGCCAGTAGAAACGCAAGAACTGACCATGCCAACAACACTCTTGCACTTTTTGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCAGCGTATTCAGAAAACCACTGGAGTTATCGCCAAGACTCCCTGGATTGGAGCCGCATACAATCTTGTTCTCTACATGCTAGCTAGTCATGTTACAGGAGCGACTTGGTATCTATCATCAATAGGGAGGCAATTTAGCTGCTGGAAAACGCAGTGCCAACTGGAGAACAAATCCCATACCCTCTCTTGCTTTTCTAGTTATCTTGATTGCAATAGTTTGAACCTCCCTGATAGACAATACTGGCTAAACATCACCCATGTAATCAGCAGATGTGACGCAAAGAGCAAGATCAACATCAAATATAAGTTTGGTATGTTCGCAGATGCTTTCCTCAATGATGTTGTCACTTCCAGTTTCAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATTTAAGCTCATATGGACAGAATTTGGACACCACCACATATCTTCCAGAGACACTCTTCTGCATCGTCTTATGCATTGCTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGTCATCAATGTCAGTTAGACTTGAAGAATGGAGGATTCGGAAAAGAGATACTGAAGAGTGGATGAGGCATCGCCAGTTACCACAGGATTTGCAGGAACGTGTCCGTCGTTTTGCTCAATACAAATGGCTTGCAACAAGAGGAGTCAATGAAGAAGCCATACTTCTTTCACTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGCCGTGTACCCTTCTTCTCACAAATGGATGATCAACTTCTTGATGCTATATGTGAACGGCTTGCGTCATCACTGAGCACCGAAGGAACCTACCTATTTCGAGAGGGTGATCCAGTGGATGAAATGTTGTTTATCATTAGAGGTCAATTGGAGAGCTCCACAACCAACGGAGGAAGGTCTGGATTCTTCAATTCCATCTCACTCCGGCCTGGTGACTTTTGTGGGGAGGAATTGTTGACATGGGCCTTAATGCCAAACTCAAACCTCAACCTACCTTCTTCTACACGCACAGTCAAAGCACTTACTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTGAAATCTGTGGCAAGTCAGTTCAAGCGTCTTCACAGCAAGAAACTTCAGCATGCATTTAGGTACTATTCCCATCAATGGAGGACATGGGCTTCTTGCTTCATACAAGCTGCTTGGAGACGGCATCAGAAGAGAAAAGCAACAAGGGAGTTATCCCTCAAAGAGGGTCTCTACTACCTGGCATTGTCTGAGGCTGAGAGGGATGGAAGTGGAAATTATGAGATCGAGGAATCCTCAGGGAGTGTGAAAAAGGTTCAGAATCTAGGTCCAACTGTTTTTGCCTCAAAGTTTGCTGCCAATACAAAGAAAGGAAACCATAAGCTACAAGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTTTCTCTAGACCACGAACAAGTTTAG 2079 0.4714 MYRILSTPASKFRQFRRLRSRPKAATATATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLQADPKLSILVTILRSFADLFYVLHMIMKFRTAFVAPNSRIFGRGELVMDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNQRIQKTTGVIAKTPWIGAAYNLVLYMLASHVTGATWYLSSIGRQFSCWKTQCQLENKSHTLSCFSSYLDCNSLNLPDRQYWLNITHVISRCDAKSKINIKYKFGMFADAFLNDVVTSSFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIVLCIAGLVLFSLLIGNMQTYLSSMSVRLEEWRIRKRDTEEWMRHRQLPQDLQERVRRFAQYKWLATRGVNEEAILLSLPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYLFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNSISLRPGDFCGEELLTWALMPNSNLNLPSSTRTVKALTEVEAFALQAEDLKSVASQFKRLHSKKLQHAFRYYSHQWRTWASCFIQAAWRRHQKRKATRELSLKEGLYYLALSEAERDGSGNYEIEESSGSVKKVQNLGPTVFASKFAANTKKGNHKLQDPVPQLFKPDEPDFSLDHEQV* 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0650 692 Pfam Cyclic nucleotide-binding domain 477 569 IPR000595 -
Gso6g0650 692 ProSiteProfiles cAMP/cGMP binding motif profile. 454 584 IPR000595 -
Gso6g0650 692 MobiDBLite consensus disorder prediction 665 692 - -
Gso6g0650 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 32 687 - -
Gso6g0650 692 SUPERFAMILY Voltage-gated potassium channels 46 376 - -
Gso6g0650 692 SMART cnmp_10 454 585 IPR000595 -
Gso6g0650 692 Gene3D Jelly Rolls 452 572 IPR014710 -
Gso6g0650 692 SUPERFAMILY cAMP-binding domain-like 384 579 IPR018490 -
Gso6g0650 692 CDD CAP_ED 454 585 IPR000595 -
Gso6g0650 692 Pfam Ion transport protein 54 381 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso6g0650 692 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 32 687 - -
Gso6g0650 692 Gene3D Helix hairpin bin 378 445 - -
Gso6g0650 692 Gene3D - 59 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0650 Gso-Chr6 6024322 6028843 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0650 10 692 Ion Channels AT5G14870 66.147 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0650 K05391 - gmx:100802812 1394.79