Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0645 ATGGATGGATATTCTGGTAAAAGAGCCATTGATGGGGTGGTAGTCCCTAGAAAGGGGATGGGCCTTGCATTTAGAGATACTGCTAATGCTAGAGATCGAAATGGTCAGGTGTGCAGCCGCATTACTTGCAGCAGCAGAGTCAATACTCCTAAAGGCACTCAAATTGGTTCTTGTGAAAAAGGTAAATCTTTGAAACCTTCAATCCAATCTTCTTCAGCTGGCAAGGAAGCAATTGGAAGCTCCTCTAGAACATGTTCCAAGACTAGTAGCCCTGGAAAACCACCTGTAAAGCCTCGGAAATCACCATCATCTCAGTTAGAGACAGATTCATCTGAAACTAGTAGTGTACAGGATGATTCAGAAGCTTCAAAACTCACCTCTCCCCCTCAAAAAAGTCAGACAGGGGGTCAAGCTGAATTGGAAAATACAGTGTCTGGTAATGTAATGATGGAGGTAGGAAGCTCTAGTATAGTATCCAATACAAGATCTCGGAGGAATTTTCATCCAAATTCTGGATTACGTGGCCAAGAAATTAAAAGCTCTGGTTCAGTGACTCGTGCTGGTACCAGTAGGTATGGATTGAGGAACCTCAAATGCAATACTATTTCTGATGTCATCCCTGCTGGTTGTTCACCTTCAGATTCAACCCTTAACAGAAGGAAGGATGTCATAAAAAAGAGAAATTGTGAAGGGGAAGGTAGTTCCACTACTAGAGGGAAGAAAATGAGCGGGTCTTCATTAGAAGCACGGAATTCTGGCCCCAGAAATGGCATATCTATCTCTGATACAAGAATATCTAGGAATACTCAAAGGGACAGGTCAGACAGCAACATGGCACCAGTTAGAACTCGAAAATTGATTAGTGGTCATACCAGGGGAAGGCTTTCTAGCCAAGGAAATGCTAATCCTGTGCCACCTAATGAGTCCCTTGTCATGATACCTTCTTTGCCTCGTTCTGGTGGTCTTAATATTCCTGGTGTATCACGTCATACTTCTGTAGATAGTCCCTTAAGTTGTCCTAGCTCTCATAGCAGACCAGGTACTGGCAATGAGGAGTTATACGGTGTTATGCCTGTGTCTCCTTCAGAATTTGGCCTCACTCATTCTCTAATGAATCTGGATAGCTTTCGACGACGTTACAACATTGATAGTATTGCAGAGGTATTGGTGGCACTTGAGAGGATTGAACAAGATGTTGAGCTAACACATGAGCAAATTCGTTTACTGGAATCCAACTTGTTCCTTACTGGACTGAACTTGTATGATCCACATAGAGACATGCGATTGGACATTGATAACATGTCATATGAGCAATTGCTGGCTTTGGAAGAGAGGATGGGTACTGTGAGCACAGCTCTAACAGAGGAAACACTATCAGAATGCCTAAAGAAAAGTGTCTACCAGTCCTCACCCTCTGACAATGAAGCTGAGAGTTGCAATGAACCTAAGGATGATACAAAATGCAGCATTTGCCAGGAGGAATATGTGGCTGCAGAAGAAGTGGGGAGTTTGCAATGCGAGCACATGTATCATGTGGCTTGCATACAGCAGTGGCTACAGCTAAAGAACTGGTGCCCTATTTGCAAAGCATCAGTGGCACAGTCAAATTCATCACCATCCTAA 1623 0.4344 MDGYSGKRAIDGVVVPRKGMGLAFRDTANARDRNGQVCSRITCSSRVNTPKGTQIGSCEKGKSLKPSIQSSSAGKEAIGSSSRTCSKTSSPGKPPVKPRKSPSSQLETDSSETSSVQDDSEASKLTSPPQKSQTGGQAELENTVSGNVMMEVGSSSIVSNTRSRRNFHPNSGLRGQEIKSSGSVTRAGTSRYGLRNLKCNTISDVIPAGCSPSDSTLNRRKDVIKKRNCEGEGSSTTRGKKMSGSSLEARNSGPRNGISISDTRISRNTQRDRSDSNMAPVRTRKLISGHTRGRLSSQGNANPVPPNESLVMIPSLPRSGGLNIPGVSRHTSVDSPLSCPSSHSRPGTGNEELYGVMPVSPSEFGLTHSLMNLDSFRRRYNIDSIAEVLVALERIEQDVELTHEQIRLLESNLFLTGLNLYDPHRDMRLDIDNMSYEQLLALEERMGTVSTALTEETLSECLKKSVYQSSPSDNEAESCNEPKDDTKCSICQEEYVAAEEVGSLQCEHMYHVACIQQWLQLKNWCPICKASVAQSNSSPS* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0645 540 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 472 539 IPR013083 -
Gso6g0645 540 MobiDBLite consensus disorder prediction 328 348 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 208 312 - -
Gso6g0645 540 SUPERFAMILY RING/U-box 483 534 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 328 351 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 218 234 - -
Gso6g0645 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 533 IPR045191 GO:0061630
Gso6g0645 540 MobiDBLite consensus disorder prediction 63 91 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 44 144 - -
Gso6g0645 540 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL44-RELATED 1 533 - -
Gso6g0645 540 Pfam Ring finger domain 487 529 IPR001841 -
Gso6g0645 540 ProSiteProfiles Zinc finger RING-type profile. 488 529 IPR001841 -
Gso6g0645 540 MobiDBLite consensus disorder prediction 101 144 - -
Gso6g0645 540 SMART ring_2 488 528 IPR001841 -
Gso6g0645 540 Coils Coil 392 412 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 156 186 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 290 305 - -
Gso6g0645 540 MobiDBLite consensus disorder prediction 235 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0645 Gso-Chr6 5972600 5977043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0645 374 529 C3H Transcription Factor Family AT2G15530 43.949 1.26e-33 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0645 - - gmx:100819874 1049.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0643 4 6272336 6276739 Gso6g0645 6 5972600 5977043 GST
Gso17g1681 17 31534104 31540095 Gso6g0645 6 5972600 5977043 PCT
Gso6g0645 6 5972600 5977043 Gso17g1681 17 31534104 31540095 PCT