Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0623 ATGGGAGAGGTGGCAGTAATGCATTCTGAGCCTCTGCAGTTTGATTGCAATGACATGAAGCATATCACTGAGAAAGATGTATATAATCTATTGTCAAACGAAGAGCACATACTTGGAGAAGAATCAAGTCAATCATCAAATGACAAAAAGATCAATGATTTGAGAGAGAGAGGATACATGAAGTATGGATGTCAACATTACCGAAGAAGATGCCGTATTAGGGCCCCCTGTTGTGATGAGATTTTTGATTGCCGCCATTGTCACAATGAGGCAAAAAATAATATCAACATTGACCAGAAGCATAGACACGATATTCCCCGCCATCAAGTTAAACAGGTGATATGTTCTCTTTGTGAGACAGAACAAGAGGTTCAGCAAAATTGTATTAACTGTGGCGTTTGTATGGGCAAGTACTTCTGTGGGACGTGTAAGCTCTTTGATGATGATGTATCTAAGCAGCAGTATCATTGCAGTGGCTGTGGAATTTGCAGAACTGGAGGATGTGAAAATTTCTTCCACTGCCACAAATGTGGTTGTTGCTACTCAACTCAGCTGAAAAACAGCCACCCTTGCGTGGAAGGAGCAATGCATCATGATTGCCCCATTTGCTTTGAGTATTTGTTTGAATCTGTGAATGATGTCACTGTTCTGCTCTGTGGACATACAATACATAAGAGCTGCCTAAAGGAAATGAGGGAACATTTCCAGTATGCATGCCCTCTCTGCTTGAAGTCGGTTTGTGATATGTCAAAGGTTTGGGAGAAATTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACCGTATCAAAACAAAATGGTTTGGATCCTTTGCAATGATTGTGGCAAAAGTTCTCACGTGCAGTTCCATCTTGTTGCTCAAAAGTGCTTGAACTGCAAGTCCTACAACACACGGGAAACAAGAGGCTGA 930 0.4172 MGEVAVMHSEPLQFDCNDMKHITEKDVYNLLSNEEHILGEESSQSSNDKKINDLRERGYMKYGCQHYRRRCRIRAPCCDEIFDCRHCHNEAKNNINIDQKHRHDIPRHQVKQVICSLCETEQEVQQNCINCGVCMGKYFCGTCKLFDDDVSKQQYHCSGCGICRTGGCENFFHCHKCGCCYSTQLKNSHPCVEGAMHHDCPICFEYLFESVNDVTVLLCGHTIHKSCLKEMREHFQYACPLCLKSVCDMSKVWEKFDLEIAATPMPEPYQNKMVWILCNDCGKSSHVQFHLVAQKCLNCKSYNTRETRG* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0623 309 ProSiteProfiles Zinc finger RING-type profile. 200 242 IPR001841 -
Gso6g0623 309 Gene3D - 271 309 - -
Gso6g0623 309 SMART ring_2 200 242 IPR001841 -
Gso6g0623 309 SUPERFAMILY CHY zinc finger-like 61 135 IPR037274 GO:0008270
Gso6g0623 309 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 25 309 - -
Gso6g0623 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 262 IPR013083 -
Gso6g0623 309 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 25 309 - -
Gso6g0623 309 Pfam Zinc-ribbon 247 305 IPR039512 -
Gso6g0623 309 Pfam CHY zinc finger 64 145 IPR008913 GO:0008270
Gso6g0623 309 ProSiteProfiles Zinc finger CHY-type profile. 57 133 IPR008913 GO:0008270
Gso6g0623 309 SUPERFAMILY RING/U-box 199 247 - -
Gso6g0623 309 Pfam Ring finger domain 199 242 IPR001841 -
Gso6g0623 309 ProSiteProfiles Zinc finger CTCHY-type profile. 135 199 IPR017921 -
Gso6g0623 309 SUPERFAMILY Zinc hairpin stack 136 193 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0623 Gso-Chr6 5776685 5782447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0623 62 305 C2H2 Transcription Factor Family AT3G18290 40.400 1.54e-52 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0623 K10144 - gmx:100812023 689.878
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso14g1059 14 18336849 18342931 Gso6g0623 6 5776685 5782447 PCT
Gso17g1719 17 32541859 32548017 Gso6g0623 6 5776685 5782447 PCT