Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0620 ATGCACACCAAATCGGCGCAGTCATCGTTTCGGGATCGGACGCACGAATTCCAGAGCATTGCGGAGAGGTTGAAGAAAACAGGGCCAGCGCCGAATGGACAAAGCAGCAGTTCATCCAGATCGGAGGAACAGCGATCCGCGATTGCAAATCAATCGGAGTTCAATAGAAGAGCTTCCAAGATCGGCTTCGGGATTCACCAAACCTCTCAGAAACTCGCCAAGCTCGCCAAGTTGGCTAAGAGGACTTCGGTTTTCGATGACCCTACCATGGAAATTCAAGAGCTTACGGGGGTTATTAAGCAAGACATCACTGCTCTAAACTCTGCGGTTGTGGATCTTCAGTTACTCAGCAACTCTCGGAACGAGAGTGGGAACGCTTCTACCGACACGACTAGCCATTCGACCACGGTGGTTGATGACCTGAAGACACGGTTGATGAGCGCCACCAAAGAGTTTAAAGATGTTCTCACCATGCGAACTGAGAACTTGAAAGTGCATGAGAATAGGAGGCAGCTGTTTTCGGCCACTGCTTCTAAGGACTCTGCGAATCCTTTTGTCCGGCAACGGCCGTTGGCTACGAGGTCGGCTGCTAGTACTTCTAATGCCCCCGCTGCACCTTGGGCTACTGGGTCATCTTCATCTCAGTTGTTTCCTAAGAAGCAGGTGGATGGGGAGAGTCAACCATTGCTGCAACAGCAGCAGCAGCAGCAAGAGGTAGTTCCATTGCAAGACAGTTACATGCAAAACAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACTCTTGTTTCTCAACAAGGAGAGATTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAATGTAGAGGGGGCGCAAGGGGCTTTGTTGAAGTATCTGAACAACATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTATATTAATATTTTTTCTTATGGTTTTCTTATTTTTTGTGGCATAG 1011 0.4728 MHTKSAQSSFRDRTHEFQSIAERLKKTGPAPNGQSSSSSRSEEQRSAIANQSEFNRRASKIGFGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTGVIKQDITALNSAVVDLQLLSNSRNESGNASTDTTSHSTTVVDDLKTRLMSATKEFKDVLTMRTENLKVHENRRQLFSATASKDSANPFVRQRPLATRSAASTSNAPAAPWATGSSSSQLFPKKQVDGESQPLLQQQQQQQEVVPLQDSYMQNRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNNISSNRWLMIKIFFILIFFLMVFLFFVA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0620 336 Pfam SNARE domain 280 332 IPR000727 -
Gso6g0620 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 7 27 IPR021538 -
Gso6g0620 336 MobiDBLite consensus disorder prediction 29 48 - -
Gso6g0620 336 SMART tSNARE_6 239 306 IPR000727 -
Gso6g0620 336 MobiDBLite consensus disorder prediction 1 48 - -
Gso6g0620 336 SUPERFAMILY t-snare proteins 51 299 IPR010989 GO:0016020|GO:0016192
Gso6g0620 336 MobiDBLite consensus disorder prediction 192 234 - -
Gso6g0620 336 Gene3D - 46 299 - -
Gso6g0620 336 PANTHER SYNTAXIN-32-LIKE 2 335 - -
Gso6g0620 336 CDD SNARE_syntaxin5 247 317 - -
Gso6g0620 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 244 306 IPR000727 -
Gso6g0620 336 MobiDBLite consensus disorder prediction 191 234 - -
Gso6g0620 336 PANTHER SYNTAXIN 2 335 IPR045242 -
Gso6g0620 336 ProSitePatterns Syntaxin / epimorphin family signature. 250 289 IPR006012 GO:0005484|GO:0006886|GO:0016020
Gso6g0620 336 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0620 Gso-Chr6 5749083 5753111 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0620 1 336 SNARE and Associated Proteins AT3G24350 64.463 3.57e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0620 K08490 - gmx:100810956 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0620 4 6033624 6037683 Gso6g0620 6 5749083 5753111 GST