Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0612 ATGGACTTTGTCTCGCCACAGCTACATTCTGAAGTCCCATTTGACACTCACCCCTTGTTAATGGCGCGCCCTACTCACCATGTCATTGACATTACGGGGAGTTCCGGACCGTCCACTTCGTCTTCTTCCACACCCCATGATAGGCTTGCCAATGATGTGGATTTTGGTGCTTTGAATTCTAGGACTAGTAGAAGGCGAGGGGATACTACGCGTAGTAGTAGGCAGCATAGGAGTCCTTTGAATTCGGGTTTGTGGATATGTGTTGAGTTAGTGATCACCGTGAGCCAGATTGTTGCGTCGGTTGTTGTTCTATCGTTGTCAAAGCATGAGCATCCGCGTGCCCCTCTGTTTGCTTGGATTGTTGGGTTTGCGTCTGGGTGTGTTGCTACCCTCCCTTTGCTGTATTGGCGGTATTATCATAATTGCCTTGTTCGGGAGCTAGAGTCATCATCTCAGGCCTCTCTGAGGAGTAATGATCCTTCGGGGACACTTCTTTCCGATTCCACGACGAATGGAGGGGAAGATGTTCCGGCATCTTCCAGAAGCAACCAAGAGTCGTGGTTGATGAATGCAAGATTGAAGCTACTAGTAGAATACTTCAAAATTGCTGTAGATTGCTTTTTTGCTATATGGTTTATTGTTGGAAATGTATGGATTTTTGGAGGACATTCATCTGCTGATCAAGCACCTAACTTGTACAGGTTATGTGTAGTGTTTCTTACTTTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTATGTGCAACAATTTGCTGCTGCCTGCCTTGCATAATTTCCATCCTTGGGGTTAGAGAGGATATGGCACAAACCCCAGGTGCATCCTCTGAATCAATTAATTCTCTGCCGACTTATAAGTTCAAAATGAAGAAAAATAAAAGCAAAGGGGAAAGCAACTCAGCTGTTAGTGAAGGTGGAGTTGTGGCTTCAGGAACTGAAAAGGAACGTATGATCTCTGGAGAAGATGCAGCTTGCTGCATCTGCCTGGCAAAGTATGAAAATAACGATGAGCTGAGAGAATTGCTTTGTTCTCACCTATTTCACAAAGACTGTGTCGACAAGTGGTTGAAGATAAATGCTTTATGCCCCCTTTGCAAGAGTGAGGTTAGTGAGAACGTAAGAGGATCAGTCTCTGGGGAAGATGCCAACCAACATCAGGGTGAAAGCAGGATTGAGAATGGCCTCACCAACACCTCATCGTAA 1221 0.4521 MDFVSPQLHSEVPFDTHPLLMARPTHHVIDITGSSGPSTSSSSTPHDRLANDVDFGALNSRTSRRRGDTTRSSRQHRSPLNSGLWICVELVITVSQIVASVVVLSLSKHEHPRAPLFAWIVGFASGCVATLPLLYWRYYHNCLVRELESSSQASLRSNDPSGTLLSDSTTNGGEDVPASSRSNQESWLMNARLKLLVEYFKIAVDCFFAIWFIVGNVWIFGGHSSADQAPNLYRLCVVFLTFSCIGYAMPFILCATICCCLPCIISILGVREDMAQTPGASSESINSLPTYKFKMKKNKSKGESNSAVSEGGVVASGTEKERMISGEDAACCICLAKYENNDELRELLCSHLFHKDCVDKWLKINALCPLCKSEVSENVRGSVSGEDANQHQGESRIENGLTNTSS* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0612 406 SMART ring_2 331 371 IPR001841 -
Gso6g0612 406 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 62 398 - -
Gso6g0612 406 MobiDBLite consensus disorder prediction 30 51 - -
Gso6g0612 406 SUPERFAMILY RING/U-box 323 378 - -
Gso6g0612 406 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 62 398 - -
Gso6g0612 406 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Gso6g0612 406 MobiDBLite consensus disorder prediction 153 180 - -
Gso6g0612 406 MobiDBLite consensus disorder prediction 382 406 - -
Gso6g0612 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 315 385 IPR013083 -
Gso6g0612 406 Pfam Ring finger domain 330 372 IPR001841 -
Gso6g0612 406 MobiDBLite consensus disorder prediction 31 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0612 Gso-Chr6 5687121 5691595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0612 62 382 C3H Transcription Factor Family AT1G80400 56.269 2.43e-134 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0612 - - gmx:100795904 799.275