Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0610 ATGGATAAAGTAAATAGAGTTTGTGCCAAAGATGAAGAGCGTCCACTCCGAATCACCAGAGCAAGAGCTAGAGCCTTGAGAGGGATTACTCCATACTCAAGACCCTCCTTAAAAAATGAGCAGAAAAATGTGCTTCGAGCACATCCGAAAAGAGCAGCATCTTCTGAAAACAAAACTTCTGTGGTTGTTCCTGCTGTTGTCCAACAGAAGGGAAGGGCAGTGCTTTCAGATGTATCAAACATGTGTGCAAAACCACATGATAAGTGTACTAAGTCATCAAAGTTTCAGGCCAAAGGAGTTTATACAAAGAAAACCACCAAGCTAGCAGCCTTAGGTGTTTCCACTGAGGTTTCATCAACACAAGAGAATGTTAGAGCAAAGTTGGCTGAAGAATTATCCACAATAAGGATGGTAGAATCAAAGGACACCATAAGAGAAGGTGTTACAGCAGACACTGCACTTTCAATGCAAAACTCTCTGAAATCTGATGAGCTCCAGAGCTCTCCAAACAAAGACATACATATGATTTGGGAGAAGCTAGGAGCCTCAGACTCCCTGACTATTGTGGACATTGATTCTGAGTTAAAGGATTCTCAAGTTTGGAGTTCTTATGCCCCTGACATATACAGCAATATTCAAGTCACAGAGCTTCAAAGGAAACCAGTGGCCAACTACATGGATAAGCTGCAGAAAGATATTAATCCAACTATGCGAGGAATTCTGGTTGATTGGCTTGTCGAGGTTTCTGAGGAATACAAGTTGGTTCCAGACACACTTTACCTGACCGTGAACCTCATTGATCGGTATCTCTCAACAAGGCTCATTCAGAAGCAAAGGCTCCAGTTGCTTGGTGTTACTTGCATGCTGATTGCATCAAAATACGAAGAGATTTGTGCACCTCGAGTGGAGGAATTTTGCTTCATCACAGATAATACATACTCAAAAGAAGAGGTATTGAAAATGGAGAGAGAAGTACTGGATCTTGTGCATTTTCAGTTATCTGTTCCCACAATCAAAACTTTTCTAAGGAGATTCATCCAAGCAGCACAATCTTCTTACAAGGCTCCTTGCGTTGAACTGGAATTCCTGGCAAATTATTTAGCAGAGCTTGCTCTTGTTGAATGCAACTTTTTCCAGTTTCTACCTTCCCTTGTAGCTGCATCCGCTGTGTTCCTTGCCAAATGGACCCTGAATGAGTCAGAACATCCATGGAATCCAACTCTGGAGCACTATACAAAATACAAAGCTTCAGAGCTCAAGACTGTTGTTCTTGCACTGCAAGATCTGCAACTTAATACCAAAGGAAGCTCCCTGAATGCTGTCCCTGAGAAGTATAAGCAACAGAAGTTCAATTGTGTGGCAAACTTGTCTCCAAAACCGGTGCAGTCACTCTTCCAGGACAAAGTGTAA 1410 0.422 MDKVNRVCAKDEERPLRITRARARALRGITPYSRPSLKNEQKNVLRAHPKRAASSENKTSVVVPAVVQQKGRAVLSDVSNMCAKPHDKCTKSSKFQAKGVYTKKTTKLAALGVSTEVSSTQENVRAKLAEELSTIRMVESKDTIREGVTADTALSMQNSLKSDELQSSPNKDIHMIWEKLGASDSLTIVDIDSELKDSQVWSSYAPDIYSNIQVTELQRKPVANYMDKLQKDINPTMRGILVDWLVEVSEEYKLVPDTLYLTVNLIDRYLSTRLIQKQRLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKEEVLKMEREVLDLVHFQLSVPTIKTFLRRFIQAAQSSYKAPCVELEFLANYLAELALVECNFFQFLPSLVAASAVFLAKWTLNESEHPWNPTLEHYTKYKASELKTVVLALQDLQLNTKGSSLNAVPEKYKQQKFNCVANLSPKPVQSLFQDKV* 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0610 469 Pfam Cyclin, C-terminal domain 336 458 IPR004367 -
Gso6g0610 469 PANTHER CYCLIN-A2-4 50 465 - -
Gso6g0610 469 SMART Cyclin_C_2 336 459 IPR004367 -
Gso6g0610 469 SUPERFAMILY Cyclin-like 197 333 IPR036915 -
Gso6g0610 469 Pfam Cyclin, N-terminal domain 207 333 IPR006671 -
Gso6g0610 469 SUPERFAMILY Cyclin-like 335 458 IPR036915 -
Gso6g0610 469 CDD CYCLIN 237 326 IPR013763 -
Gso6g0610 469 Gene3D - 221 334 - -
Gso6g0610 469 SMART cyclin_7 340 428 IPR013763 -
Gso6g0610 469 SMART cyclin_7 243 327 IPR013763 -
Gso6g0610 469 Gene3D - 207 455 - -
Gso6g0610 469 PANTHER CYCLINS 50 465 IPR039361 -
Gso6g0610 469 CDD CYCLIN 334 426 IPR013763 -
Gso6g0610 469 PIRSF Cyclin_A_B_D_E 23 468 IPR039361 -
Gso6g0610 469 ProSitePatterns Cyclins signature. 238 269 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0610 Gso-Chr6 5672315 5678113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0610 9 465 Core Cell Cycle Gene Families AT5G25380 52.620 6.91e-152 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0610 K06627 - gmx:100807750 909.442
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0612 4 5924018 5935265 Gso6g0610 6 5672315 5678113 GST
Gso14g1045 14 17589904 17596657 Gso6g0610 6 5672315 5678113 PCT
Gso17g1735 17 33537705 33544796 Gso6g0610 6 5672315 5678113 PCT
Gso6g0610 6 5672315 5678113 Gso14g1045 14 17589904 17596657 PCT
Gso6g0610 6 5672315 5678113 Gso17g1735 17 33537705 33544796 PCT