Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0605 ATGTCTCAGACCAACTGGGAAGCTGACAAGATGTTAGATGTTTACATCCATGATTATCTTGTTAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAAGGAAAAGTATCATCGGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGATATATTTATTGCAAGGACAAATGAAAAGCACTCAGAGGTTGCTGCATCGTATATTGAGACACAATTAATAAAGGCAAGGGAGCAACAACAGCAGCAGAACCAGCAGCAGCCACAGCCCCAGCAATCACAGCATCAGCAACAACACATGCAGATGCAACAGCTCCTGTTGCAGAGAGCACAGCAACAACAGCAGCAGCAGCAGCAACAACAACAGCAGCCACAATCGCAGCAACAGCAGTCACAACCACAACAACAACAGCAAAGTAGGGATAGGCCTCATCTTTTAAATGGTAGTGCAAATGGGTTAGTCGGAAACCCTGGAACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAACTTCCCCTTCAAAGGGACTCTTTGGATGATGCAGCAACGAAGCAAAGATTTGGTGAGAACATGGGCCAGCTCTTGGACCCAAATCATGCACCGATATTAAAGTCAGCTGCAGCTCCTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTGCTGGTGGGATGTCTCCACAAGTTCAAGCACGTACTCAACAATTACCAGGGTCTACTCTGGATATAAAGGGTGAGATTAGTCCTGTTTTAAATCCCAGAGCTGTGGGTCCTGAAGGATCATTGATGGGAATGCCTGGATCAAATCCAGGTAGCAATAATTTGACTTTGAAAGGGTGGCCTCTCACAGGTTTGGAGCAACTGCGCTCTGGTCTACTCCAGCAACAAAAACCTTTCATGCAGGCTCCTCAGCCTTTTCATCAACTCCAAATGTTGACACCACAGCATCAGCAACAGCTTATGCTGGCACAACAAAATCTGGCATCACCATCTGCCAGTGAAGAAAGTAGAAGACTGCGAATGCTATTAAATAATAGGAATATTGGTCTAAATAAGGATGGTCTTTCAAATCCTGTTGGTGATGTGGTATCAAATGTTGGATCCCCACTTCAAGGTGGTGGTCCTCCTTTTCCTCGTGGAGATACAGATATGCTAGTGAAGTTGAAGCTGGCTCAGTTACAGCAGCAGCAACAACAACAGTCAAGTACCAATGCACAGCAGCAGCAGCTTCAACAGCACACCCTTTCAAACCAGCAATCTCAGACTTCTAATCATAGCATGCACCAGCAAGATAAAGTAGGTGGAGGTGGTGGTGGCAGTGTCACTGTGGATGGTAGCATGTCAAACTCATTTAGAGGAAATGACCAGGTTTCAAAAAACCAGATTGGGAGAAAGAGAAAACAGCCTGGCTCCTCGTCAGGTCCTGCCAATAGTTCAGGAACAGCAAATACTACAGGTCCATCACCAAGTTCAGCACCCTCAACTCCTTCAACTCATACGCCTGGAGATGTGATATCAATGCCTGCCTTGCCTCATAGTGGTAGTTCTTCGAAGCCTTTAATGATGTTTAGCACAGATGGCACTGGAACCCTTACGTCACCATCTAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGATCGCTTTGTGGAGGATGGATCTCTAGATGAAAATGTTGAGTCTTTTTTGTCCCATGATGACACGGACCCTAGAGATACTGTTGGCCGTTGTATGGATGTAAGCAAAGGCTTCACATTTTCTGATGTAAATTCTGTACGGGCAAGCACAAGCAAAGTTTCCTGTTGCCATTTCTCATCTGATGGGAAATTACTAGCAAGTGGTGGCCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAACAAAAAGCTACTCTTGAAGAGCATTCATCTTTGATTACTGATGTCCGTTTCAGTCCTAGCATGCCTCGTCTTGCAACATCTTCATTCGACAAAACTGTCAGGGTTTGGGATGTTGACAATCCTGGTTATTCACTTCGCACCTTCACGGGACATTCAACATCTGTTATGTCACTAGATTTTCATCCAAATAAAGATGACCTCATCTGCTCTTGTGATGGTGATGGTGAGATACGGTATTGGAGCATAAACAATGGAAGTTGTGCTAGAGTCTCCAAGGGTGGCACCACACAGATGAGATTTCAGCCTCGTCTCGGGAGGTACCTTGCTGCAGCGGCAGAGAATATTGTGTCTATTTTTGATGTGGAGACACAAGTGTGTCGATATTCACTAAAGGGACACACAAAACCGGTGGTTTGTGTGTGTTGGGACCCTTCTGGGGAGTTGCTGGCATCTGTGAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCAGGGAGTGATGGGGAATGTGTTCATGAACTTAGCTGTAACGGAAATAAGTTTCATAAATCTGTTTTCCACCCAACGTACCCTTCATTGCTGGTCATTGGCTGTTACCAGTCATTGGAGTTGTGGAACATGAGCGAGAACAAGACGATGACTCTGTCTGCTCATGATGGTCTCATTACTTCCTTGGCTGTTTCAACTGTAAATGGTTTGGTTGCTTCAGCTAGTCATGACAAGTTCCTCAAGCTCTGGAAGTGA 2679 0.4543 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRAQQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEERLKLPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSPQVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLMLAQQNLASPSASEESRRLRMLLNNRNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNAQQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRKRKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLITDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKGHTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPSLLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK* 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 775 807 IPR001680 GO:0005515
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 860 892 - -
Gso6g0605 892 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 1 892 IPR044716 GO:0003714
Gso6g0605 892 MobiDBLite consensus disorder prediction 454 514 - -
Gso6g0605 892 MobiDBLite consensus disorder prediction 89 155 - -
Gso6g0605 892 Gene3D - 741 892 IPR015943 GO:0005515
Gso6g0605 892 SMART WD40_4 601 640 IPR001680 GO:0005515
Gso6g0605 892 SMART WD40_4 853 892 IPR001680 GO:0005515
Gso6g0605 892 SMART WD40_4 812 851 IPR001680 GO:0005515
Gso6g0605 892 SMART WD40_4 729 765 IPR001680 GO:0005515
Gso6g0605 892 SMART WD40_4 643 682 IPR001680 GO:0005515
Gso6g0605 892 SMART WD40_4 768 806 IPR001680 GO:0005515
Gso6g0605 892 SMART WD40_4 686 726 IPR001680 GO:0005515
Gso6g0605 892 Coils Coil 402 422 - -
Gso6g0605 892 MobiDBLite consensus disorder prediction 408 534 - -
Gso6g0605 892 Gene3D - 584 740 IPR015943 GO:0005515
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 650 685 - -
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 650 685 IPR001680 GO:0005515
Gso6g0605 892 MobiDBLite consensus disorder prediction 408 442 - -
Gso6g0605 892 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 1 892 - -
Gso6g0605 892 Pfam LisH 10 36 IPR006594 GO:0005515
Gso6g0605 892 CDD WD40 608 892 - -
Gso6g0605 892 ProSitePatterns Trp-Asp (WD) repeats signature. 669 683 IPR019775 -
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 693 731 - -
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 860 892 IPR001680 GO:0005515
Gso6g0605 892 MobiDBLite consensus disorder prediction 361 394 - -
Gso6g0605 892 SMART Lish 8 40 IPR006594 GO:0005515
Gso6g0605 892 MobiDBLite consensus disorder prediction 89 168 - -
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 608 649 IPR001680 GO:0005515
Gso6g0605 892 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 608 639 - -
Gso6g0605 892 Pfam WD domain, G-beta repeat 609 639 IPR001680 GO:0005515
Gso6g0605 892 Pfam WD domain, G-beta repeat 689 726 IPR001680 GO:0005515
Gso6g0605 892 Pfam WD domain, G-beta repeat 647 682 IPR001680 GO:0005515
Gso6g0605 892 Pfam WD domain, G-beta repeat 855 892 IPR001680 GO:0005515
Gso6g0605 892 Pfam WD domain, G-beta repeat 771 805 IPR001680 GO:0005515
Gso6g0605 892 ProSiteProfiles Trp-Asp (WD) repeats profile. 693 735 IPR001680 GO:0005515
Gso6g0605 892 SUPERFAMILY WD40 repeat-like 606 892 IPR036322 GO:0005515
Gso6g0605 892 Coils Coil 110 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0605 Gso-Chr6 5593181 5606284 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0605 687 891 Miscellaneous Gene Families AT5G08390 24.286 1.21e-11 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Gso6g0605 WD40 0.0044 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0605 - - gmx:100805628 1374.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0605 4 5844319 5854097 Gso6g0605 6 5593181 5606284 GST
Gso14g1042 14 17291803 17307809 Gso6g0605 6 5593181 5606284 PCT
Gso17g1744 17 33758477 33769871 Gso6g0605 6 5593181 5606284 PCT
Gso6g0605 6 5593181 5606284 Gso14g1042 14 17291803 17307809 PCT
Gso6g0605 6 5593181 5606284 Gso17g1744 17 33758477 33769871 PCT