Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0601 ATGGAAAGTGGTGAACTGAGAGTGGCGAGTGCACGCATAGGGAGCTCCGGCGTGTGGAGAAGCGGCAGCATTGACGTGTTTTCAGGGTCTTCAAGAAGGGATGATGATGAACAAGAGCTTAAATGGGCTGCAATTGAGAAACTCCCCACGTATCTACGCATGACTAGGGGAATTCTCACTGAGACAGAAGGCCAACCTACAGAGATTGATATAAACAAACTTTGTCCACTTCAGAGGAAGAACTTGGTGGAGAGGCTCGTCAAGATTGCGGAACAAGATAATGAGAAGTTCTTGTTCAAATTAAGGGACCGCATTGATCGTGTTGGACTTGAAATTCCGACGATTGAAATCCGTTTTGAACACTTGAATGTTGAGGCAGAAGCTCATGTGGGAAGCAGGGCACTACCTACAATCTTTAACTTCTGCATCAATTTGTTTGAGGGGTTCCTCAATTCTCTTCACCTTATTCCCAGTCGAAAGAAGCCATTCACAGTTCTTGATGATGTCAGTGGAATCATCAAGCCAAAAAGAATGACATTGCTTTTAGGCCCTCCAAGCTCTGGAAAGACCACATTATTGTTGGCACTGGCTGGAAGGCTTAGTAAAGATCTAAAATTTTCGGGGCGAGTTTCGTATAATGGACATGGGATGGAGGAATTTGTGCCTCAGAGAACATCAGCTTACATAAGTCAAACTGATCTACACATAGGAGAAATGACAGTCAGAGAAACATTGGCCTTTTCTGCAAGGTGTCAAGGGATCGGAACCCGATATGAGATGCTGGCAGAATTGTCAAGAAGAGAGAAGGCTGCAAACATTAAGCCAGATCCTGATCTTGATATTTATATGAAGGCGGCAGCACTAGAAGGCCAAGAAACCAATGTAGTTACAGATTATATAATGAAGATTTTGGGACTGGAAGTTTGTGCTGATACCATGGTAGGGGATGACATGATTCGAGGTATTTCTGGAGGACAAAAGAAGAGAGTCACGACTGGTGAGATGCTAGTCGGACCAGCAAGAGCACTTTTCATGGATGAAATATCAACCGGTTTAGACAGTTCTACCACATTCCAAATGGTTAATTCTCTAAGACAATCTATCCACATTCTGAATGGAACAGCTGTGATCTCTCTTCTCCAGCCAGCACCAGAAACTTATGAGTTATTTGATGATATAATTCTCCTCTCAGATGGGCAAATTGTGTATCAGGGTCCAAGGGAAAATGTGCTTGAGTTCTTTGAGTACATGGGGTTCAAATGTCCAGAGAGGAAAGGAGTAGCAGATTTTTTACAAGAAGTAACATCAAGAAAAGACCAAGAACAGTATTGGGCAAATAAAGATGAGCCATACTCCTTTGTTACTGTTAAAGAGTTTGCTGAAGCATTTCAGTCATTTCACGCAGGTCGAAAACTCGGTGATGAACTTGCCACTCCATTTGACATGTCCAAAGGCCACCCTGCCGTGTTGACAAAAAACAAGTTTGGTGTTTGCAAGAAGGAACTTTTGAAAGCCTGTGTGTCCAGAGAATTCTTACTTATGAAAAGGAATTCTTTTGTCTATATTTTCAAGATGTGGCAACTGATTTTAACGGGGTTCATAACAATGACATTGTTCCTGAGAACTGAGATGCACCGGGATACAGAAACTGATGGTGGGATCTACATGGGTGCATTGTTCTTCGTACTAATTGTGATTATGTTCAATGGATACTCCGAGCTATCCATGTCCATCATGAAACTCCCCGTTTTCTATAAGCAAAGGGACCTTCTCTTTTTTCCTTGTTGGGCATACTCTCTGCCCACATGGATCCTTAAGATTCCTATCACCTTAGTGGAAGTTGGTATTTGGGTTGTGATGACTTACTATGTTATAGGCTTTGATCCTAGTATTGAAAGGTTCATCAAGCAATACTTTCTACTTGTTTGTATCAACCAAATGGCATCTGGACTTTTTCGATTTATGGGAGCAGTTGGAAGGAACATCATTGTTGCAAACACAGTTGGGTCATTTGCTTTACTTGCAGTTATGGTCATGGGTGGATTTATCCTATCTAGAGTTGATGTGAAGAAATGGTGGTTGTGGGGTTACTGGTTCTCGCCGATGATGTATGGACAAAATGCTCTAGCTGTGAATGAATTCCTCGGAAAGAGTTGGTCACATGTTACTCCTAATTCAACAGAACCATTAGGAGTAAAGGTCTTGAAGTCACGTGGGATTTTCCCCAAAGCATACTGGTATTGGATTGGAGTTGGAGCTTCCATTGGATACATGTTACTATTCAACTTCCTTTTCCCCTTGGCCTTGCATTATCTTGACCCATTTGGTAAACCACAAGCATTAATCTCAGAAGAAGCCTTGGCTGAGAGAAATGCTGGCAGAAACGAACACATCATCGAATTATCGTCTAGAATCAAAGGCTCTTCTGATAAAGGGAATGAAAGTCGTAGAAATGTGTCCTCTAGAACACTGTCAGCAAGAGTGGGTGGCATTGGTGCAAGTGAACACAACAAGAAACGAGGGATGGTTCTTCCTTTCACACCCCTTTCTATCACTTTTGATGAAATCAGATATTCGGTGGAGATGCCACAGGAAATGAAGAGCCAAGGCATTCTTGAAGATCGACTTGAACTGTTGAAGGGTGTTAATGGAGCTTTTAGACCAGGAGTTCTTACAGCTCTAATGGGTGTAAGCGGGGCTGGTAAAACAACTCTAATGGATGTATTATCTGGAAGAAAAACAGCAGGTTATATTCAAGGGCAAATCACTATTTCCGGGTACCCTAAAAGGCAAGAAACGTTTGCTCGCATAGCAGGATACTGTGAGCAGACTGATATCCACTCTCCCCATGTTACAGTCTATGAGTCTTTGGTTTATTCTGCATGGCTTCGCTTACCCCCTGAGGTTGATTCTTCCACCAGACAGATGTTCATTGAGGAAGTTATGGAGCTGGTAGAGCTGACTTCATTAAGAGAAGCCTTGGTGGGATTGCCTGGAGTGAATGGCCTATCCACGGAGCAGCGCAAGAGGTTAACAATTGCAGTTGAACTTGTTGCCAATCCATCTATTATATTCATGGATGAACCTACCTCTGGCCTTGATGCCAGAGCTGCTGCTATAGTAATGAGAACAGTGAGGAATACAGTTGATACCGGCCGAACTGTGGTCTGCACAATCCACCAGCCTAGCATTGATATATTTGATGCTTTTGATGAGCTACTTCTGTTGAAGCGTGGAGGTGAGGAAATATATGTGGGACCTTTAGGCCAGCATTGTTCTCATCTGATCAATCACTTTGAGGGAATTAATGGGGTGCCAAAAATTAAGAATGGTTATAATCCTGCCACTTGGATGTTGGAGGTTACTTCAGAAGCACAAGAAGCAGCTCTTGGAGTTAACTTCGCTGAAATATACAAGAATTCTGACCTATATAGGAGAAACAAGGCCTTGATCAGGGAACTTACCACACCTCCAACAGGTTCCAAAGACTTATACTTCCCCACAAAGTACTCACAGACTTTCTTCACTCAATGCATGGCTTGCCTTTGGAAACAGCACCTATCATACTGGAGAAATCCCCCATATAGTGCAGTGAGACTTTTATTCACAACAATCATAGCCTTATTGTTTGGGACAATATTTTGGGATATTGGCTCCAAAAGGCAAAGAAAACAAGATCTATTTAATGCAATGGGATCCATGTATGCTGCAGTCCTCTTCATTGGGATACAAAATGCTACATCTGTGCAACCAGTTGTAGCCATTGAGAGAACTGTCTTCTATAGAGAAAGAGCTGCTGGAATGTACTCAGCTTTACCATATGCATTTGGACAGGTTGCTATTGAGATCCCATACATATTCATACAAACCCTCGTGTATGGAGTCATAGTGTATGCTATGATTGGGTTTGATTGGACGTTCAGCAAGTTCTTTTGGTATCTCTTCTTCATGTTCTTCACCTTTTTATACTTCACCTTTTATGGCATGATGGCTGTGGGTCTCACACCGGATCACAACGTAGCTGCTATAGTTTCCTTTGGGTTCTACATGATATGGAACCTCTTCTCAGGATTCGTCATTCCAAGAACTAGAATGCCAGTGTGGTGGAGATGGTACTTTTGGATTTGTCCAGTGTCTTGGACCTTATATGGATTGGTGACTTCACAATTTGGTGACATAAAAGAACCTATAGATACTGGAGAGACTGTGGAAGAGTTTGTTAGGAGTTATTTTGGGTATAGAGATGACTTTGTAGGCGTAGCTGCAGCTGTGCTTGTTGGGTTTACACTGCTTTTTGGATTTACCTTTGCCTTCTCAATCAAGGCATTCAATTTCCAAAAGAGATGA 4347 0.4233 MESGELRVASARIGSSGVWRSGSIDVFSGSSRRDDDEQELKWAAIEKLPTYLRMTRGILTETEGQPTEIDINKLCPLQRKNLVERLVKIAEQDNEKFLFKLRDRIDRVGLEIPTIEIRFEHLNVEAEAHVGSRALPTIFNFCINLFEGFLNSLHLIPSRKKPFTVLDDVSGIIKPKRMTLLLGPPSSGKTTLLLALAGRLSKDLKFSGRVSYNGHGMEEFVPQRTSAYISQTDLHIGEMTVRETLAFSARCQGIGTRYEMLAELSRREKAANIKPDPDLDIYMKAAALEGQETNVVTDYIMKILGLEVCADTMVGDDMIRGISGGQKKRVTTGEMLVGPARALFMDEISTGLDSSTTFQMVNSLRQSIHILNGTAVISLLQPAPETYELFDDIILLSDGQIVYQGPRENVLEFFEYMGFKCPERKGVADFLQEVTSRKDQEQYWANKDEPYSFVTVKEFAEAFQSFHAGRKLGDELATPFDMSKGHPAVLTKNKFGVCKKELLKACVSREFLLMKRNSFVYIFKMWQLILTGFITMTLFLRTEMHRDTETDGGIYMGALFFVLIVIMFNGYSELSMSIMKLPVFYKQRDLLFFPCWAYSLPTWILKIPITLVEVGIWVVMTYYVIGFDPSIERFIKQYFLLVCINQMASGLFRFMGAVGRNIIVANTVGSFALLAVMVMGGFILSRVDVKKWWLWGYWFSPMMYGQNALAVNEFLGKSWSHVTPNSTEPLGVKVLKSRGIFPKAYWYWIGVGASIGYMLLFNFLFPLALHYLDPFGKPQALISEEALAERNAGRNEHIIELSSRIKGSSDKGNESRRNVSSRTLSARVGGIGASEHNKKRGMVLPFTPLSITFDEIRYSVEMPQEMKSQGILEDRLELLKGVNGAFRPGVLTALMGVSGAGKTTLMDVLSGRKTAGYIQGQITISGYPKRQETFARIAGYCEQTDIHSPHVTVYESLVYSAWLRLPPEVDSSTRQMFIEEVMELVELTSLREALVGLPGVNGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFDAFDELLLLKRGGEEIYVGPLGQHCSHLINHFEGINGVPKIKNGYNPATWMLEVTSEAQEAALGVNFAEIYKNSDLYRRNKALIRELTTPPTGSKDLYFPTKYSQTFFTQCMACLWKQHLSYWRNPPYSAVRLLFTTIIALLFGTIFWDIGSKRQRKQDLFNAMGSMYAAVLFIGIQNATSVQPVVAIERTVFYRERAAGMYSALPYAFGQVAIEIPYIFIQTLVYGVIVYAMIGFDWTFSKFFWYLFFMFFTFLYFTFYGMMAVGLTPDHNVAAIVSFGFYMIWNLFSGFVIPRTRMPVWWRWYFWICPVSWTLYGLVTSQFGDIKEPIDTGETVEEFVRSYFGYRDDFVGVAAAVLVGFTLLFGFTFAFSIKAFNFQKR* 1449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0601 1448 Gene3D - 867 1095 IPR027417 -
Gso6g0601 1448 CDD ABCG_PDR_domain2 848 1086 IPR034003 -
Gso6g0601 1448 Pfam ABC transporter 166 348 IPR003439 GO:0005524
Gso6g0601 1448 Pfam ABC transporter 879 1031 IPR003439 GO:0005524
Gso6g0601 1448 CDD ABCG_PDR_domain1 148 405 IPR034001 -
Gso6g0601 1448 Pfam ABC-transporter N-terminal 90 141 IPR029481 -
Gso6g0601 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 150 423 IPR003439 GO:0005524
Gso6g0601 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 875 1091 IPR027417 -
Gso6g0601 1448 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 161 423 IPR027417 -
Gso6g0601 1448 PANTHER CASSETTE TRANSPORTER, PUTATIVE-RELATED 9 1448 - -
Gso6g0601 1448 Gene3D - 152 462 IPR027417 -
Gso6g0601 1448 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 851 1104 IPR003439 GO:0005524
Gso6g0601 1448 PANTHER ATP-BINDING CASSETTE TRANSPORTER 9 1448 - -
Gso6g0601 1448 Pfam Plant PDR ABC transporter associated 719 782 IPR013581 -
Gso6g0601 1448 Pfam ABC-2 type transporter 381 433 IPR043926 GO:0140359
Gso6g0601 1448 SMART AAA_5 888 1080 IPR003593 -
Gso6g0601 1448 SMART AAA_5 175 407 IPR003593 -
Gso6g0601 1448 Pfam ABC-2 type transporter 1176 1390 IPR013525 GO:0016020|GO:0140359
Gso6g0601 1448 Pfam ABC-2 type transporter 502 714 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0601 Gso-Chr6 5538945 5546696 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0601 887 1102 Calmodulin-binding Proteins AT2G36910 27.027 1.65e-06 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0601 K08711 - gmx:100804030 2849.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0601 4 5792786 5800351 Gso6g0601 6 5538945 5546696 GST
Gso17g1750 17 33998695 34007210 Gso6g0601 6 5538945 5546696 PCT
Gso6g0601 6 5538945 5546696 Gso14g1038 14 16612685 16621522 PCT
Gso6g0601 6 5538945 5546696 Gso17g1747 17 33880658 33891175 PCT