Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0595 ATGTCCACGCGTGCCAAGAACGTGTTTGCAAGGTTCTGTTTTTGCCATGATGAGGCTGCGGATGATGAGAGGCATAGAAAGCACGTAGAGTTTGATCAAATGACGAATGAAGGAAGCCAATACAGCCTCAACGGAGTTCCGCTTCCGTCTCTCGGCGCCACCGCCGCTGGCCGCTCCCAGAGATACAAGCTCCGGAGTTACATTGTCTCCCCGTACAATCCTCGTTACAGATTGTGGAACACGTTTCTGGTGTTGTTAGTTTTCTACACTGCATGGGTTTGCCCCTTTGAGTTTGGATTCCTTAACGATCCGTCGGATCCTCTTTCCATTGCTGACAATGTGGTGAACTTTTTTTTTGCCATTGACATTGTTCTGACCTTCTTTGTTGCCTACCTCAACAAGTCTACGTATCTGCTCGTGGATGAACCAAAGCTCATTGCCTCCAGATATCTTAGAACATGGTTTGCCTTTGATGTCCTCGCCACCGTCCCTTCTGAATTTGCCCGCCACGTCTTGCCGCCTCCTTTTAAGCAATATGGCATGTTCAACATTCTCCGTCTATGGCGTCTCCGTAGAGTTAGTGCCATGTTTGCAAGATTAGAAAAGGACAGAAATTATAACTACTTCTGGGTGCGCTGTTCAAAGCTTATATGTGTTACGCTATTTTCAGTGCATTTTGCTGCCTGCATTTTCTATTTTCTTGCTTTAGATCGTGACCCAAGTTCAACATGGCTTAGCCTGGTTTCTGATGACGCTCAAAGCAGTGTTTGGAAGCGCTATGTAACATCAATGTACTGGTCCATAGTGACTCTTTCAACAGTCGGTTATGGTGACCTGCATCCAGTAAGTACCAAGGAGATGGTGTTTGACGTATTTTATATGCTCTTTAACCTCGGACTAACGGCATATCTTATCGGAAACATGACAAACTTGGTTGTTCATGGGACAAGCAGAACTAGGAAATATAGAGACACGGTGCAAGGTGCGACAAGTTTTGCCCGTCGGAATCAGTTACCTATCCGCTTGGAAGAACAGATGCTTGCTCATTTGTTTATGAAGTACAGAACTGATTTAGAAGGATTGCAGCAACAAGAAATTATTGAAACCCTTCCAAAGGCTATTAGATCTAGCATCGCACACTACCTATTCTATCCACTTGTGGACAAAGTGTACTTGTTTCATGGAGTGTCGAGTGACCTACTCTTTCAACTGGTCACGGAGATGAGGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAGAATGAAGCGCCAACAGACTTTTATATCTTTGTTACTGGTGCTGCAGAACTCATCATTAGAAACAATGGAATGGAGCAGGTCGTTGGTGAGGCAGGGTCAGGAGATATAGTTGGAGAAATAGGAGTTCTATGTTACAGGCCACAGATGTTTACAATTCGAACCAAACGATTGAGCCAAATTCTGCGCTTGAACCGTACTACATTTATAAATCTTGTTCATTCAAATATTGGAGATGGGGCAATAGTTATGAACAATTTTCTCCAGCATTTGCAAGAATCAAGGTATCCGGGGATGGATGTTATTTTGGCAGAAACGGAGGCCATGCTTGCTCGGGGCAAAATGGACATGCCCATTACCACATGCTTTGCAGTAACCAGAAATGATGATCTATTGTTGCATCGTTTGCTTAAGAGGGGTTCAGATCCAAATGAATTAGATAGGAGTGGAAAGACAGCACTGCATATTGCAGCTTCCAAAGGCAATGAGCATTGTGTAAATTTGCTTCTAGAATATGGTGCTGATCCAAATAGCAAAGATATGGATGGAAGTGTCCCACTATGGGAAGCAATGAAGGGTAGGCATGAATCCGTGATGAAAATTCTCATAGACAATGGTGCAGACATATCTTTTGCCGATGCAGGCCATCTAGCATGCAGTGCTGTTGAGCAAAATAACATGGAATTGCTCAAGGAAATTATTCAATGTGGCATGGATGTGACACAACCTAAAAAAAATGGAGCCACAGCTCTTCATACTGCAGTAGTTGAAGGAAACACTGAGATGATTAACTTCCTTGTAGACCAAGGAGCAGACATTGACATGCAAGATGTTAATGGGTGGACACCAAGGGTTTTGGCAGAACAAAGTGAAAGCGAAGAAATTAAAAATATATTCCATGACATTAAAGATAGCAGAAAACCAGGTGTTATTCCAATTTCAAAGAATGACAACAGGAGTGGGAGGTTTCAAATTGATCCAAGCATGCTTACCATACCCCAAGAAAGCATGCTACTGCCACCTTATGATGGGAGGAGAAGGTCTTCCAGCTCTTTTGATAATTCCATTTTTGGAATGATGTCAACTGCCAATCGTGCTAAGAGAGATCTCCAGGCATCTGAAAGCAGTAGCACTAGAAGGAGTGTGAATGGATTAGCCAGAGTGACACTTAGTTGTCCTGAAAAGGGTGAACATGCTGGAAAGCTTGTTTTGCTGCCCAAGACCCTTGAAGAGCTGCTAGATATTGGTGCCAGAAAGTTTGATATATCTGCCACCAAAATTTTGACCACAAATGGAGCTGAAGTAGAGGATATAAATCTTGTAAGAGATGGTGATCATCTTATTATTGGCGGTATTGAAGAGGGAAACAAGAATTGA 2640 0.4307 MSTRAKNVFARFCFCHDEAADDERHRKHVEFDQMTNEGSQYSLNGVPLPSLGATAAGRSQRYKLRSYIVSPYNPRYRLWNTFLVLLVFYTAWVCPFEFGFLNDPSDPLSIADNVVNFFFAIDIVLTFFVAYLNKSTYLLVDEPKLIASRYLRTWFAFDVLATVPSEFARHVLPPPFKQYGMFNILRLWRLRRVSAMFARLEKDRNYNYFWVRCSKLICVTLFSVHFAACIFYFLALDRDPSSTWLSLVSDDAQSSVWKRYVTSMYWSIVTLSTVGYGDLHPVSTKEMVFDVFYMLFNLGLTAYLIGNMTNLVVHGTSRTRKYRDTVQGATSFARRNQLPIRLEEQMLAHLFMKYRTDLEGLQQQEIIETLPKAIRSSIAHYLFYPLVDKVYLFHGVSSDLLFQLVTEMRAEYFPPKEDVILQNEAPTDFYIFVTGAAELIIRNNGMEQVVGEAGSGDIVGEIGVLCYRPQMFTIRTKRLSQILRLNRTTFINLVHSNIGDGAIVMNNFLQHLQESRYPGMDVILAETEAMLARGKMDMPITTCFAVTRNDDLLLHRLLKRGSDPNELDRSGKTALHIAASKGNEHCVNLLLEYGADPNSKDMDGSVPLWEAMKGRHESVMKILIDNGADISFADAGHLACSAVEQNNMELLKEIIQCGMDVTQPKKNGATALHTAVVEGNTEMINFLVDQGADIDMQDVNGWTPRVLAEQSESEEIKNIFHDIKDSRKPGVIPISKNDNRSGRFQIDPSMLTIPQESMLLPPYDGRRRSSSSFDNSIFGMMSTANRAKRDLQASESSSTRRSVNGLARVTLSCPEKGEHAGKLVLLPKTLEELLDIGARKFDISATKILTTNGAEVEDINLVRDGDHLIIGGIEEGNKN* 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0595 879 Pfam Ankyrin repeats (3 copies) 638 715 IPR002110 GO:0005515
Gso6g0595 879 Pfam Ankyrin repeats (3 copies) 545 631 IPR002110 GO:0005515
Gso6g0595 879 Pfam KHA, dimerisation domain of potassium ion channel 808 870 IPR021789 -
Gso6g0595 879 PANTHER POTASSIUM CHANNEL AKT1 5 879 IPR045319 GO:0005249|GO:0006813
Gso6g0595 879 Gene3D - 77 313 - -
Gso6g0595 879 ProSiteProfiles Ankyrin repeat region circular profile. 570 601 - -
Gso6g0595 879 PANTHER INWARDLY RECTIFYING POTASSIUM CHANNEL SUBUNIT 5 879 - -
Gso6g0595 879 ProSiteProfiles cAMP/cGMP binding motif profile. 392 511 IPR000595 -
Gso6g0595 879 SUPERFAMILY Ankyrin repeat 543 722 IPR036770 -
Gso6g0595 879 Gene3D Jelly Rolls 358 522 IPR014710 -
Gso6g0595 879 ProSiteProfiles Ankyrin repeat profile. 603 635 IPR002110 GO:0005515
Gso6g0595 879 ProSiteProfiles Ankyrin repeat region circular profile. 667 698 - -
Gso6g0595 879 ProSiteProfiles Ankyrin repeat profile. 667 699 IPR002110 GO:0005515
Gso6g0595 879 SMART ANK_2a 634 663 IPR002110 GO:0005515
Gso6g0595 879 SMART ANK_2a 570 599 IPR002110 GO:0005515
Gso6g0595 879 SMART ANK_2a 603 632 IPR002110 GO:0005515
Gso6g0595 879 SMART ANK_2a 667 696 IPR002110 GO:0005515
Gso6g0595 879 SMART cnmp_10 392 509 IPR000595 -
Gso6g0595 879 ProSiteProfiles Ankyrin repeat region circular profile. 603 634 - -
Gso6g0595 879 SUPERFAMILY cAMP-binding domain-like 317 512 IPR018490 -
Gso6g0595 879 ProSiteProfiles KHA domain profile. 808 879 IPR021789 -
Gso6g0595 879 Pfam Cyclic nucleotide-binding domain 412 496 IPR000595 -
Gso6g0595 879 CDD CAP_ED 392 497 IPR000595 -
Gso6g0595 879 PRINTS EAG/ELK/ERG potassium channel family signature 89 96 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso6g0595 879 PRINTS EAG/ELK/ERG potassium channel family signature 112 122 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso6g0595 879 PRINTS EAG/ELK/ERG potassium channel family signature 123 132 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso6g0595 879 PRINTS EAG/ELK/ERG potassium channel family signature 260 277 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso6g0595 879 PRINTS EAG/ELK/ERG potassium channel family signature 286 297 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso6g0595 879 PRINTS EAG/ELK/ERG potassium channel family signature 304 313 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gso6g0595 879 SUPERFAMILY Voltage-gated potassium channels 71 313 - -
Gso6g0595 879 Pfam Ion transport protein 77 319 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso6g0595 879 PRINTS Ankyrin repeat signature 571 586 IPR002110 GO:0005515
Gso6g0595 879 PRINTS Ankyrin repeat signature 619 633 IPR002110 GO:0005515
Gso6g0595 879 ProSiteProfiles Ankyrin repeat profile. 570 602 IPR002110 GO:0005515
Gso6g0595 879 Gene3D - 539 722 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0595 Gso-Chr6 5493912 5499868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0595 32 870 Ion Channels AT2G25600 57.593 0.0 998
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0595 K21867 - gmx:100802964 1758.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0597 4 5754433 5760986 Gso6g0595 6 5493912 5499868 GST
Gso14g1030 14 16323930 16338380 Gso6g0595 6 5493912 5499868 PCT
Gso17g1763 17 34327212 34334891 Gso6g0595 6 5493912 5499868 PCT
Gso6g0595 6 5493912 5499868 Gso14g1030 14 16323930 16338380 PCT
Gso6g0595 6 5493912 5499868 Gso17g1763 17 34327212 34334891 PCT