Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0588 ATGACTAAGAAGAAGAATCCCCTGGTGTTTATGGATGTGTCGATCGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTTTTCTATGATGTTGCTCCCAAGACTGCAGAAAACTTTCGTGCATTATGTACAGGAGAAAAAGGCATCAGTCCAAATACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCAGATCATAAAAGGTTCCATTGTGCAGGGTGGAGATTTTGTCAATCGAAATGGGACTGCTGGAGAAAGCATATATGGTTCAAAGTTCCCAGATGAGTCACCTAGGCTAAAGCATGATGCTACTGGCCTTTTATCAATGGCAATTGCAGACCGTGACACACTCGGTTCCCATTTCATTATCACTTTGAAAGCTGATCATCATCTTGATAGGAAACATGTAGTCTTTGGGAAGCTTGTGCAAGGGCATAATGTATTGAAGAAAATTGAAGAATTCGGTGATGAAGAAGGGCATCCAACTGTAACTGTTAAAATCATTAATTGTGGTGAATATAGCGAGGATGGAAAGAAGGTAAATAAATCAAAAATGGGAAAGAATAAAAAATCTTCAAAAGACAGAAGGAAAAGGAGAAAATACTACTCATCTGAATCCGGGAGCTCTTCAGATTCTGATACAGAATCTTTGGAAACTGATAGTGATTCCGAGTCAGATATGTCCTCATCATCTTACATGAGTTCTTCTAGTGATGACAGGCGAAAGAAGAGAAAGAGATCTAAGAAAGATAAATATAGACGGGGAAAGAGAAAAGATAAACGTCGTGACAAGAGGCGAAGGAAAAAGGATAAGAGATCAAAGCGTAAATCAAAAAGGGAATCGGGCAGTGACTCAGATAGTGAGAGTAACAGTGACAATAGCTCTGAAGGTGAAAATATTGGTGCTCAACATAAAGGGCTTAAGCGTAAAGATAATTCTCAGAAAAATGCTGAAACAAAGTCTCCCTTGGTTGCGGAGAAAGATTTGCCTCCTGCGCATCATGAAAAGGAGGAAATGGGTATGCTAGAGAATGAGGAAAAATTGTCAAAGGAAAACGGAGAGCGACGTAACAATGGCATTGGAGGAGCTGACTATGGATCTGACAGAAGTGAAGAGAGGCAGCCTGACGTTATGGATGATCATTCAGGCAAAACTAGGAGTCGAAGCGTGAGTCCTAAGCGACCCATGAGTAAGAGTATGAGTATTAGTCCCAGGAGGAGTGCGAGCAAGAGCCCAAGTGTTACTCCAAAAAGGAGATTGAGCAAAAGTCCCAGTGTTAGAAGCCCTCCTCCATCACAGAGGAGTTTGAGCAGAAGTCCTGCCAGAAGCATCAGCAGGAGTCCGAGCAGAAGCATCAGTAGAAGCCCAGTAAGAGGCAGGAATGGGAGAAGTGTCAATAGAAGTCCAGTGAGAGGCAGGAATGGGAGAAGTGTCAGTAGAAGCCCAGTGAGAGGCAGGAATGGGAGAAGTGTCCGTAGAAGCCCAGTGAGAGGCAGGAATGGGAGAAGTGTCAGTAGAAGCCCAGTGAGAGGCAGGAATGGGAGAAATGTCAATAGAACCCCTGTGAGAGGCGGGAATGGGAAAAGTGTCAGTAGAAGCCCTGTGAGAACTCGTTCTCTTAAAAGTGTCAGTAGAAGCCCTGTGAGAACTCGTTCTCTTAGAAGTGTCAGCAAGAGCCCTGTGAGAGCTCGTTCTCAAAGCCACCGGAGCAGGAGTTCTCCTAGAGCACCATCAGGAAAAACTATCAGCAGAAGCCCTGTAAGAGTGTTGAGAAAGAGTATAAGCCGCAGTCCAGTTAGATCACCTGCAAGAAGTTTAAGCAGAAGCTCTGGCTGGGTTCCTTCAAAGAAAAGCATCAGCCGAAGCCCAGTCAGAGCACCTAGTAGAAGCATTCGCCGTAGTTATTCTAGAAGTCCTAGCCCTGTTCGTAGGACAAGGACACCTCGTGGGAGAAGTGTGTCAAGGAGCGTATCACCTGATGCTTCACCAAAGCGTATCAGAAGGGGAAGAGGTTTCAGTGAAAGATACTCTTATGCAAGAAGGTATAGAACCCCCTCCCGGTCTCCTGTGAGGTCATACCGCTACAATGGAAGAAATGACAGGGACAGGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATATCGAGCTCGACGATATAGCCGAAGTAGGAGCCCAGTTCGTAGTAGGAGTCCAGTTCGCAGTCGTTCCCCAGTTGATCGATCCCGCCCCACTCGTGTGGAGAGGCGTGCATCTTCTTCTCGGAGCAGGAGTCCATCCAAATCCCGGTCTAGGTCTAGGTCCAGGTCATCCGTGGAATCTCCACCAAGAGCAAGTAGAGACAGCAGGTCCAGGTCATCGTCCAGAAGCCCAGATGGAAAGAAAGGCTTGGTCGCATATGGCGATGGTTCTCCATACTAA 2442 0.4607 MTKKKNPLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGEKGISPNTGKSLHYKGSFFHQIIKGSIVQGGDFVNRNGTAGESIYGSKFPDESPRLKHDATGLLSMAIADRDTLGSHFIITLKADHHLDRKHVVFGKLVQGHNVLKKIEEFGDEEGHPTVTVKIINCGEYSEDGKKVNKSKMGKNKKSSKDRRKRRKYYSSESGSSSDSDTESLETDSDSESDMSSSSYMSSSSDDRRKKRKRSKKDKYRRGKRKDKRRDKRRRKKDKRSKRKSKRESGSDSDSESNSDNSSEGENIGAQHKGLKRKDNSQKNAETKSPLVAEKDLPPAHHEKEEMGMLENEEKLSKENGERRNNGIGGADYGSDRSEERQPDVMDDHSGKTRSRSVSPKRPMSKSMSISPRRSASKSPSVTPKRRLSKSPSVRSPPPSQRSLSRSPARSISRSPSRSISRSPVRGRNGRSVNRSPVRGRNGRSVSRSPVRGRNGRSVRRSPVRGRNGRSVSRSPVRGRNGRNVNRTPVRGGNGKSVSRSPVRTRSLKSVSRSPVRTRSLRSVSKSPVRARSQSHRSRSSPRAPSGKTISRSPVRVLRKSISRSPVRSPARSLSRSSGWVPSKKSISRSPVRAPSRSIRRSYSRSPSPVRRTRTPRGRSVSRSVSPDASPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRNDRDRYRSRRSRTPSVSRSPRYRARRYSRSRSPVRSRSPVRSRSPVDRSRPTRVERRASSSRSRSPSKSRSRSRSRSSVESPPRASRDSRSRSSSRSPDGKKGLVAYGDGSPY* 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0588 813 MobiDBLite consensus disorder prediction 600 661 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 773 797 - -
Gso6g0588 813 Gene3D - 1 175 IPR029000 -
Gso6g0588 813 MobiDBLite consensus disorder prediction 508 565 - -
Gso6g0588 813 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 173 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 190 317 - -
Gso6g0588 813 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 196 - -
Gso6g0588 813 SUPERFAMILY Cyclophilin-like 4 176 IPR029000 -
Gso6g0588 813 MobiDBLite consensus disorder prediction 663 683 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 304 318 - -
Gso6g0588 813 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 ISOFORM X1 190 317 - -
Gso6g0588 813 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 ISOFORM X1 1 196 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 329 356 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 368 389 - -
Gso6g0588 813 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 MobiDBLite consensus disorder prediction 391 486 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 741 762 - -
Gso6g0588 813 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
Gso6g0588 813 MobiDBLite consensus disorder prediction 178 813 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 185 199 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 243 278 - -
Gso6g0588 813 MobiDBLite consensus disorder prediction 696 711 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0588 Gso-Chr6 5439712 5446267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0588 26 170 U-box Gene Family AT5G67530 39.456 3.19e-19 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0588 K09566 - gmx:100800303 375.17