Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0584 ATGGCTGTGGCTTTTCAGTGTTTATCATGTGCTCGGAGTGACCCCTTCCTCACCGCAAGCCAATCCCTCACTCTTCCTTTCCAACGCAAACCACTTTTTTGCTCTGTCCCTCTTTCCTCTCGCGCTCGCAATCTCTCTTCTTCAATTGTCGCCGCTTCTTCCAAAAAGAAAAACAAGAAAAAAAAGTCTCATGATCATGTTACGAAGGACGATGACGATGGCGTGGACGCGTTTGAGCTGCTCTTCAAGCAACTCGAGGAAGATCTCAAACGCGGTGATTTGCCAGAAGATGATGATGAGATAACCGAAGAAGACATGGCATTGCTTGAACGTGAGTTGGAAAATGCATTGGGGGACTTTGATGCTGAATTGTTGAACTCGGATGTAATCGACATGGAAACTGGCACTGATTCAGAAAATGATGATGATGATGATGATGATGATGATGGTGATGGTGATGACGTTGAGAATGATGATGGTGGTGGAGATGAAAGGTCGCTGAACCTTAAGAGTTGGCAGATGAAGAAATTGGCTAGAGCTTTAAAAGCTGGCCGCCGCAAAACAAGTATAAAAAATCTTGCTGCTGATCTTTGTCTTGACAGGGCTCTTGTTCTTCAAATGCTTCGTGACCCTCCTCCAAATCTTTTAATGATGAGTCTAACAATACCTGATGAACCCGCAACGACTGTAGTATCACTTGAAACTAAGCCCAGCGAAATTGTTCATAAAGAAACAAGTATTGATCATGCGGAACCTGAACCCAAGGCTAAAGTACCTGTTCATACCTTGCAACGTAATTGGCATGCTCAAAAGCGATTGAAAAAGGCCCATGTTGACACTTTGGAGAGAGTTTATAGGAGATCAAAACGACCCACTAATGCAATGATCAGTAGTATCGTACATGTAACAAACATTCCTCGAAAAAAAGTTGTTAAGTGGTTTGAAGACAAACGTGCTGAGGAGGGAGTTCCAGATCGTCGTGTTCCTTACCAGCGCTCTGTTCCTGAAACTGCATGA 1017 0.4376 MAVAFQCLSCARSDPFLTASQSLTLPFQRKPLFCSVPLSSRARNLSSSIVAASSKKKNKKKKSHDHVTKDDDDGVDAFELLFKQLEEDLKRGDLPEDDDEITEEDMALLERELENALGDFDAELLNSDVIDMETGTDSENDDDDDDDDDGDGDDVENDDGGGDERSLNLKSWQMKKLARALKAGRRKTSIKNLAADLCLDRALVLQMLRDPPPNLLMMSLTIPDEPATTVVSLETKPSEIVHKETSIDHAEPEPKAKVPVHTLQRNWHAQKRLKKAHVDTLERVYRRSKRPTNAMISSIVHVTNIPRKKVVKWFEDKRAEEGVPDRRVPYQRSVPETA* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0584 338 MobiDBLite consensus disorder prediction 134 160 - -
Gso6g0584 338 CDD homeodomain 270 319 IPR001356 GO:0003677
Gso6g0584 338 MobiDBLite consensus disorder prediction 132 169 - -
Gso6g0584 338 Pfam Homeodomain 272 320 IPR001356 GO:0003677
Gso6g0584 338 SMART HOX_1 270 328 IPR001356 GO:0003677
Gso6g0584 338 MobiDBLite consensus disorder prediction 319 338 - -
Gso6g0584 338 PANTHER HOMEOBOX PROTEIN 8 15 333 - -
Gso6g0584 338 MobiDBLite consensus disorder prediction 52 71 - -
Gso6g0584 338 Gene3D - 266 325 - -
Gso6g0584 338 ProSiteProfiles 'Homeobox' domain profile. 264 324 IPR001356 GO:0003677
Gso6g0584 338 SUPERFAMILY Homeodomain-like 266 330 IPR009057 -
Gso6g0584 338 PANTHER ZINC-FINGERS AND HOMEOBOXES RELATED 15 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0584 Gso-Chr6 5404278 5407769 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Gso6g0584 Homeodomain 9.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0584 - - gmx:100798718 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0585 4 5663312 5666321 Gso6g0584 6 5404278 5407769 GST