Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0568 ATGGGAAAACATTGGTCTTTCTTCCATATTACGGGTACCCTTTTCCTTTTGTGCAAAGTCTGTCTAGCTGGGAGTCAATATTCTGGACGTGTCTTACCCGGGGTATTAAATGGTTCTCAAATGAATTGGATTGACAGAGATGGCAAGTTCCTTGTCTCAAAAAAGGTTCAGTTTGCCTTTGGCTTTGTCACCACAACGAATGACACCACCAAGTTTCTACTTGCAATCATCCATGTGGCCACTACCAGGGTAATTTGGACCGCCAATAGAGCAGTTCCTGTTGCTAACTCGGACAATTTTGTGTTTGATGAAAAGGGCAACGCTTTCTTACAGAAAGATGGAACCTTGGTTTGGTCAACAAGCACAAGTAACAAAGGGGTTTCTTCAATGGAATTGCTTGACACAGGGAATTTGGTTTTGCTTGGAATTGATAATAGCACAGTGATTTGGCAAAGTTTTAGCCATCCAACAGATACTTTGTTGCCAACTCAAGAGTTCACTGAGGGAATGAAACTCATCAGTGATCCTAGCTCAAACAACTTGACCCATGTTCTTGAGATCAAGTCTGGTAATGTTGTTCTCACTGCAGGTTTTCGAACCCCGCAGCCTTATTGGACTATGCAGAAGGACAACCGCAGAGTCATCAACAAGGGCGGTGATGCGGTGGCTTCAGCAAACATTAGTGGAAATTCATGGAGGTTCTATGACAAAAGCAAATCTTTGTTGTGGCAATTCATTTTCTCTGCAGATCAAGGCACAAATGCGACTTGGATTGCTGTTTTGGGGAGTGATGGCTTCATCACTTTCTCGAACCTCAACGATGGAGGGTCAAATGCTGCTTCTCCAACAACAATACCCCAAGATTCTTGTGCTACACCGGAACCTTGTGATGCATACACCATATGCACAGGTGACCAAAGAAGGTGTAGTTGCCCTTCTGTTATTCCTAGTTGCAAACCTGGTTTTGATTCTCCCTGTGGTGGTGACTCAGAAAAGTCCATTCAGTTGGTTAAAGCTGATGATGGGCTTGATTACTTTGCGCTTCAATTCCTTCAACCTTTTTCGAAAACCGATTTGGCTGGTTGCCAATCTTCTTGCCGCGGAAACTGCTCGTGCCTTGCTTTGTTCTTCCACAGAAGTTCAGGGGCCTGTTTCCTTTTGGACAGTGTAGGTAGCTTTCAGAAACCTGATTCTGATTCTGGTTATGTTTCTTACATTAAGGTCTCGACAGATGGAGGCGCTGGCACGGGTTCTGGGGGCGGCGGAGGTGTCCATAAGCACACCATAGTTGTTGTGGTCATTGTCATAATAGCCTTGGTTGTCATTTGTGGTCTGGTCTTTGGGGGAGTTAGATACCACAGAAGAAAGCAAAGGTTGCCTGAGTCTCCTAGAGAAGGTTCAGAAGAGGACAATTTCTTGGAGAATTTGACTGGCATGCCAATCCGTTACAGCTACAAGGACCTTGAGGCGGCCACTAATAACTTCTCTGTGAAGCTTGGGCAAGGGGGTTTTGGGTCAGTGTACAAAGGAGTTCTACCCGATGGGACTCAGTTAGCAGTGAAGAAGTTGGAAGGTATTGGACAAGGGAAGAAAGAGTTCAGGGCTGAAGTTAGCATCATTGGTAGCATTCATCATCTTCATTTGGTTAGGCTTAAGGGATTCTGTGCTGATGGAACTCATAGGCTCCTTGCTTATGAATACCTGTCTAATGGCTCCTTGGATAAATGGATATTCAAGAAAAACAAAGGTGAGTTTCAGTTGGATTGGGATACTAGGTTCAATATAGCTCTGGGAACAGCAAAAGGACTTGCTTATCTGCATGAAGATTGTGACTCAAAGATTGTTCATTGTGACATCAAGCCGGAAAACGTGCTTCTGGATGACCACTTCATGGCCAAGGTTTCGGATTTTGGGCTGGCTAAGCTCATGAACCGAGAACAAAGCCATGTTTTCACAACACTGAGGGGCACCAGGGGATATCTTGCACCGGAGTGGATAACAAACTATGCCATATCAGAGAAAAGTGATGTCTATAGCTATGGTATGGTGCTACTAGAGATCATTGGGGGAAGGAAAAACTATGATCCCAGTAAGTCTTCAGAGAAGTCCCATTTCCCAACTTATGCTTATAAGATGATGGAAGAAGGGAAGCTGAGAGATATTTTTGACTCGGAGTTGAAAATTGATGAGAATGATGATAGGTTTCAATGTGCTATAAAAGTTGCATTGTGGTGCATACAGGAAGACATGTCAATGAGGCCATCTATGACCAGAGTTGTCCAAATGTTGGAGGGTATTTGTATTGTTCCTAACCCACCAACCAGTTCTTCGTTGGGTTCTCGCCTTTATGCCACTGTGTTCAAATCCTCCAGTGAAGGGGCCACCTCTTCTGGTCCCTCAGACTGTAACAGTGATGCTTATCTCTCCGCGGTTCGCCTTTCAGGGCCTAGATAA 2454 0.4454 MGKHWSFFHITGTLFLLCKVCLAGSQYSGRVLPGVLNGSQMNWIDRDGKFLVSKKVQFAFGFVTTTNDTTKFLLAIIHVATTRVIWTANRAVPVANSDNFVFDEKGNAFLQKDGTLVWSTSTSNKGVSSMELLDTGNLVLLGIDNSTVIWQSFSHPTDTLLPTQEFTEGMKLISDPSSNNLTHVLEIKSGNVVLTAGFRTPQPYWTMQKDNRRVINKGGDAVASANISGNSWRFYDKSKSLLWQFIFSADQGTNATWIAVLGSDGFITFSNLNDGGSNAASPTTIPQDSCATPEPCDAYTICTGDQRRCSCPSVIPSCKPGFDSPCGGDSEKSIQLVKADDGLDYFALQFLQPFSKTDLAGCQSSCRGNCSCLALFFHRSSGACFLLDSVGSFQKPDSDSGYVSYIKVSTDGGAGTGSGGGGGVHKHTIVVVVIVIIALVVICGLVFGGVRYHRRKQRLPESPREGSEEDNFLENLTGMPIRYSYKDLEAATNNFSVKLGQGGFGSVYKGVLPDGTQLAVKKLEGIGQGKKEFRAEVSIIGSIHHLHLVRLKGFCADGTHRLLAYEYLSNGSLDKWIFKKNKGEFQLDWDTRFNIALGTAKGLAYLHEDCDSKIVHCDIKPENVLLDDHFMAKVSDFGLAKLMNREQSHVFTTLRGTRGYLAPEWITNYAISEKSDVYSYGMVLLEIIGGRKNYDPSKSSEKSHFPTYAYKMMEEGKLRDIFDSELKIDENDDRFQCAIKVALWCIQEDMSMRPSMTRVVQMLEGICIVPNPPTSSSLGSRLYATVFKSSSEGATSSGPSDCNSDAYLSAVRLSGPR* 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0568 817 ProSiteProfiles Bulb-type lectin domain profile. 36 153 IPR001480 -
Gso6g0568 817 Pfam D-mannose binding lectin 84 166 IPR001480 -
Gso6g0568 817 SUPERFAMILY Protein kinase-like (PK-like) 475 765 IPR011009 -
Gso6g0568 817 Gene3D Phosphorylase Kinase; domain 1 461 567 - -
Gso6g0568 817 CDD STKc_IRAK 499 766 - -
Gso6g0568 817 PIRSF SRK 5 813 IPR024171 GO:0004674
Gso6g0568 817 ProSiteProfiles Protein kinase domain profile. 493 766 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0568 817 CDD PAN_AP_plant 354 409 - -
Gso6g0568 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 817 - -
Gso6g0568 817 SMART serkin_6 493 763 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0568 817 Gene3D Transferase(Phosphotransferase) domain 1 568 770 - -
Gso6g0568 817 CDD B_lectin 44 156 IPR001480 -
Gso6g0568 817 Pfam Protein kinase domain 497 761 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0568 817 SUPERFAMILY alpha-D-mannose-specific plant lectins 81 207 IPR036426 -
Gso6g0568 817 ProSitePatterns Protein kinases ATP-binding region signature. 499 522 IPR017441 GO:0005524
Gso6g0568 817 SMART blect_4 42 156 IPR001480 -
Gso6g0568 817 Gene3D - 42 156 IPR036426 -
Gso6g0568 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Gso6g0568 817 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 8 817 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0568 Gso-Chr6 5270751 5274063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0568 437 775 Receptor kinase-like Gene Family AT5G20050 45.961 4.93e-97 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Gso6g0568 Pkinase 1.9e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0568 - - gmx:100791158 1600.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0571 4 5536356 5539467 Gso6g0568 6 5270751 5274063 GST
Gso14g1005 14 14557441 14560868 Gso6g0568 6 5270751 5274063 PCT
Gso17g1793 17 35139491 35142962 Gso6g0568 6 5270751 5274063 PCT
Gso6g0568 6 5270751 5274063 Gso14g1005 14 14557441 14560868 PCT
Gso6g0568 6 5270751 5274063 Gso17g1793 17 35139491 35142962 PCT