Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0564 ATGGAACTTGAGTCGGGTCTTGCTCTCCCCACTCACAATTCCGTTGAGGAATTCAAGCTTAACAAGTCGAAACAGATAGTGAGTTTAGAGTTATGGAGACCCAGTTGCGGTTCAGATAGCGAAAAGCGTGTCAAACACAATAAGCGCAGCTTCGAAGAGTCCTTTGGACAATTTTTGAAACCTTTTCCTTTACTAGTATGGAGTGGACAGCCAAATGAAGAAGAAGACCGTAATGAAAAGGTGCAAAGAAACATTCACACACCAAACAAGAACGGTGATGAAGAAAACCATTTGGTGGGGTGGCCACCAGTTAAATCATGGAGGAGGAAAGAGCTCCATCGGCAGCAGTATCCTGCGAGAGGCCAAATTAGGAACGATAGGATTCAAGCTAATGAGAATCAAAGTAGAAGACCAAACTCTTTATATGTAAAGGTTAACATGGAAGGGGTAGCCATAGGAAGGAAAATCAATTTGAGGCTTTTCAATTCTTATCAGACACTTACAAGCAGCTTGATCAGCATGTTTGCTAAATACCAAAAATTTGAGGAAGTTGGAGAAAGTTACACACTCAACTTTCAAAACGAACAAGGGGATTGGCTGCAAGTAGGACATGTTCCATGGCAATCCTTCATTGGTACTGTGCGGCGTTTGGTGATACTGAGGAATGGAAGTGAAACTATTTGA 684 0.4211 MELESGLALPTHNSVEEFKLNKSKQIVSLELWRPSCGSDSEKRVKHNKRSFEESFGQFLKPFPLLVWSGQPNEEEDRNEKVQRNIHTPNKNGDEENHLVGWPPVKSWRRKELHRQQYPARGQIRNDRIQANENQSRRPNSLYVKVNMEGVAIGRKINLRLFNSYQTLTSSLISMFAKYQKFEEVGESYTLNFQNEQGDWLQVGHVPWQSFIGTVRRLVILRNGSETI* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0564 227 SUPERFAMILY CAD & PB1 domains 133 217 - -
Gso6g0564 227 Gene3D - 141 226 - -
Gso6g0564 227 ProSiteProfiles PB1 domain profile. 140 227 IPR000270 GO:0005515
Gso6g0564 227 Pfam AUX/IAA family 33 225 IPR033389 -
Gso6g0564 227 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 223 IPR003311 GO:0005634|GO:0006355
Gso6g0564 227 PANTHER AUXIN-RESPONSIVE PROTEIN IAA29 1 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0564 Gso-Chr6 5228919 5230603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0564 132 219 B3 DNA Binding Superfamily AT1G59750 34.091 8.98e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Gso6g0564 AUX_IAA 2.8e-34 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0564 K14484 - gmx:100783359 468.003