Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0560 ATGGCACAAGATACTGCTACTCCACCAGTTCCTTTTGATTTCGAACTCTTGGTTGGTGATCACCTTAGAACTGTCTCAGCCTCATCCAGCAGCAGCAGGGCAGACCCATGGATTGAACCTGAAAGGTTGAAACTCAGACACAGGATTGGTCGGGGACCCTTTGGTGATGTTTGGTTAGCAACTCATCATCAATCAACTGAAGATTATGATGAGTATCATGAAGTAGCTGCCAAGATGTTACCTCCAATCAGAGAGGAACATATGAAAACTGCATTAGAGAAATTTTGTGAATTATATTTCCGGTGCCAAGGAGTGGGTAGGGTGTGCTGGCTACTTGGAATTTCAATTTTAAATGGAAGGATATGCATCATTATGAATTTTTATGAGGGTTCAGTCGGTGACAAGATGGCTAGACTCAGAGAGGGAAGGATTTCATTGCCTGGCGTTCTGAGGTATGGTATCGATCTGGCTGAAGGTATTCTGGAACTTCACTCAAAAGGGATCCTAGTTCTCAACCTTAAACCATCGAATGTGCTTCTTGATGATACTGATCAAGCAATACTGGGAGATATTGGTATTCCAAATCTTCTGTTTGGTTCCTCATTCCTAAGCTCAGATATGGCTAACAGGATTGGTACTCCAAACTACATGGCTCCAGAACAATGGCAGCCAGAAGTCAGAGGCCCTATATCCTTTGAAACAGATTCATGGGGATTTGGGTGCACTATTGTGGAAATGTTGACTGGTAATCAACCTTTGTATGGGTCTCCTGTTGGTGAAATCTACCAATCGGTTGTTGAAAAGTATGAAAAACCCCAGATTCCTAGTGGCCTTCCTTCTTCAGTTGAAAATATCCTCAGTGGTTGCTTTGAATATGATTTGAGGAATCGCCCTTCTGTGGTAGATATTCTGGCCGTCTTTAGAAGCTTACTGAATGCAGTAGCCAATGATGGAGGATGGATATATCTTGGAACTAAAACTATAGCAAAATCAAGTAGCACTGGCTACACTCAGTGGTCCCTCTCAAAGGATCATCTTCAGGTGGGTGATACAGTGCGCTCTAGAAAGCCTTCCAATTCATGCAATCCTCAAAACATGGAGGTCCCGCAAGGAAATGTTGTTGGTTTAGAACGTAATGCAGATCATGGATTTGTTTTAGTGAGGCTCCATGGTGTTCACGACCCTGTAAGGATTCATGCATCAACTCTTGAACGTGTCACCAATGGTTTGGGAGCTGGGGATTGGGTACACTTGAAGGAAGAAGATGAGAAGCACTCGCCAGTGGGTATTCTTCATTCTATCAATCGTGATGGCAGAGTAACTGTTGGGTTTATCGGTCTGCAAACTCTTTGGAACGGTAACTCTTCAGAACTTGAAATGGCAGAACCTTATTGCGTGGGCCAGTTTATTAGGCTGAAAACCAATGTTTTGAGTCCTCGATTTGAATGGCCACGTAAAAGGGAAGGTGCCTGGGCTACTGGTAAGATTTCTTGGATCCTACCAAATGGATGTCTAGTTGTCAAGTTTCCAGGCATGTTGAACTTTTTGGATGCACCAAGCACCGTCTTGGCTGATCCCTCCGAGGTTGATGTCGTTAATTTTAAGAATTGTCCAAAGATGATAGAGAAGTATCAACATGTAGAGGATCACCACTGGGCAGTTAGACCTGTGCTACTTGCATTTGGCCTTCTTACTGCTGTGAAACTAGGAATGTCAATTGGAAAGAAGTTTGGGAGGAACATTAATGTTACTGCAATGGAGAGTGAAAGTCATTATACAGATAGCCAGAATGCTAGCACTAGCAGCCCTACATGGACATCTTCAGTAGCTAGCATCCTTTTCAGAGAAGGTGTTAACTTGCCCAATGGTCACTAG 1875 0.4341 MAQDTATPPVPFDFELLVGDHLRTVSASSSSSRADPWIEPERLKLRHRIGRGPFGDVWLATHHQSTEDYDEYHEVAAKMLPPIREEHMKTALEKFCELYFRCQGVGRVCWLLGISILNGRICIIMNFYEGSVGDKMARLREGRISLPGVLRYGIDLAEGILELHSKGILVLNLKPSNVLLDDTDQAILGDIGIPNLLFGSSFLSSDMANRIGTPNYMAPEQWQPEVRGPISFETDSWGFGCTIVEMLTGNQPLYGSPVGEIYQSVVEKYEKPQIPSGLPSSVENILSGCFEYDLRNRPSVVDILAVFRSLLNAVANDGGWIYLGTKTIAKSSSTGYTQWSLSKDHLQVGDTVRSRKPSNSCNPQNMEVPQGNVVGLERNADHGFVLVRLHGVHDPVRIHASTLERVTNGLGAGDWVHLKEEDEKHSPVGILHSINRDGRVTVGFIGLQTLWNGNSSELEMAEPYCVGQFIRLKTNVLSPRFEWPRKREGAWATGKISWILPNGCLVVKFPGMLNFLDAPSTVLADPSEVDVVNFKNCPKMIEKYQHVEDHHWAVRPVLLAFGLLTAVKLGMSIGKKFGRNINVTAMESESHYTDSQNASTSSPTWTSSVASILFREGVNLPNGH* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0560 624 PANTHER OS06G0639500 PROTEIN 6 619 - -
Gso6g0560 624 SUPERFAMILY Protein kinase-like (PK-like) 40 306 IPR011009 -
Gso6g0560 624 Gene3D Transferase(Phosphotransferase) domain 1 129 333 - -
Gso6g0560 624 PANTHER OS06G0639500 PROTEIN 6 619 - -
Gso6g0560 624 ProSiteProfiles Protein kinase domain profile. 43 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0560 624 Pfam Protein tyrosine and serine/threonine kinase 43 304 IPR001245 GO:0004672|GO:0006468
Gso6g0560 624 CDD STKc_PknB_like 44 309 - -
Gso6g0560 624 Pfam Mind bomb SH3 repeat domain 346 458 IPR040847 -
Gso6g0560 624 Gene3D Phosphorylase Kinase; domain 1 19 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0560 Gso-Chr6 5201376 5205816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0560 34 317 MAP Kinase Kinase Kinase AT4G35780 24.567 3.17e-20 92.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Gso6g0560 PK_Tyr_Ser-Thr 3e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0560 - - gmx:100789574 1266.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0564 4 5468282 5472618 Gso6g0560 6 5201376 5205816 GST
Gso14g1000 14 14421248 14427151 Gso6g0560 6 5201376 5205816 PCT
Gso17g1797 17 35195574 35202809 Gso6g0560 6 5201376 5205816 PCT
Gso6g0560 6 5201376 5205816 Gso14g1000 14 14421248 14427151 PCT
Gso6g0560 6 5201376 5205816 Gso17g1797 17 35195574 35202809 PCT