Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0542 ATGGCGTACCATAACCCCCAAGACCTTCCACTTCACCATTTCACTGACCAACAACAACACCATAACCATACTCTCCCTCACAACTCCTTGCTCTCCGACCCTGCCTCCAAACCTGCCTCCGATCCTCACCAACCCGCGCCAAATTGGCTCAACAACGCCCTTCTCCGAACGGACTACACCCACACCACCACCACCACCACCACCAACACCGCTGCTAACAACAGCAACAACAGCACCAACTTCCTCAACCTCCACACTTCCGCTTCCGACTCCGGCCAATGGCAGGCCCGCCCGATCCTTAACCGCAACCACAGCGAGGTCATCGATGACGTGGCCGGCGCAGGCGCCGAATCCGGAGATTTGAAGGGAGAGACGGCGCCGGTGGACGGCCTCTTGAACTGGCAGAATGCGAGATTGAAGGCGGAGATTTTAACGCATCCTCTGTACGAACAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTCGACCAGTTGCCCAGGATCGACGCTCAGCTCGCACAGTCCCAGAATGTGGTCGCCAAGTACTCTGCCTTCGGACAAGCCATCGTTGGCGACGATAAAGAACTCGATCAGTTCTTGTCCCACTATGTTCTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAGCATGTCCGGGTCCATGCAATGGAAGCAGTCATGGCTTGTTGGGAGATCGAGCAATCCTTACAAAGTTTAACAGGAGTTTCACCCGGGGAAGGTACGGGAGCAACAATGTCTGATGACGAAGATGAGCAAGTAGATAGTGATGCCAATCTGTTTGATGGTGCTTTGGATGGTCCTGATAGCATGGGATTCGGTCCTCTTATTCCCACAGAGAATGAGAGGTCCCTCATGGAACGTGTAAGACATGAATTGAAGCACGAATTGAAACAGGGTTATAAAGATAAAATCGTGGACATAAGAGAGGAAATTTTACGTAAGAGACGAGCTGGGAAACTTCCTGGTGACACGACCTCTGTCCTTAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACGGAGGAGGATAAGGCACGGTTGGTGCAGGAAACGGGTTTGCAGTTAAAGCAGATCAATAATTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAGTCCCTCAACTTCTACTGTTTTGAAGAGCAAGCGCAAAAGAAGTAATGCAGGTCTTAATAGTGCTGATCAGTACACGTAA 1236 0.5121 MAYHNPQDLPLHHFTDQQQHHNHTLPHNSLLSDPASKPASDPHQPAPNWLNNALLRTDYTHTTTTTTTNTAANNSNNSTNFLNLHTSASDSGQWQARPILNRNHSEVIDDVAGAGAESGDLKGETAPVDGLLNWQNARLKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQAIVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSSPSTSTVLKSKRKRSNAGLNSADQYT* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0542 411 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 35 401 - -
Gso6g0542 411 SMART HOX_1 324 389 IPR001356 GO:0003677
Gso6g0542 411 CDD homeodomain 325 386 IPR001356 GO:0003677
Gso6g0542 411 MobiDBLite consensus disorder prediction 21 35 - -
Gso6g0542 411 SMART ELK_2 302 323 IPR005539 GO:0003677
Gso6g0542 411 SMART KNOX1_2 137 181 IPR005540 GO:0003677|GO:0005634
Gso6g0542 411 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 35 401 - -
Gso6g0542 411 Pfam KNOX2 domain 194 244 IPR005541 GO:0003677|GO:0005634
Gso6g0542 411 MobiDBLite consensus disorder prediction 17 49 - -
Gso6g0542 411 Pfam KNOX1 domain 139 180 IPR005540 GO:0003677|GO:0005634
Gso6g0542 411 ProSiteProfiles ELK domain profile. 302 322 IPR005539 GO:0003677
Gso6g0542 411 SMART KNOX2_2 190 245 IPR005541 GO:0003677|GO:0005634
Gso6g0542 411 SUPERFAMILY Homeodomain-like 324 387 IPR009057 -
Gso6g0542 411 Pfam Homeobox KN domain 342 381 IPR008422 GO:0003677|GO:0006355
Gso6g0542 411 Pfam ELK domain 302 323 IPR005539 GO:0003677
Gso6g0542 411 Gene3D - 323 384 - -
Gso6g0542 411 ProSiteProfiles 'Homeobox' domain profile. 322 385 IPR001356 GO:0003677
Gso6g0542 411 MobiDBLite consensus disorder prediction 383 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0542 Gso-Chr6 5050414 5054320 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0542 1 399 Homeobox Transcription Factor Family AT5G25220 65.766 0.0 540
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Gso6g0542 KNOX2 1.3e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0542 - - gmx:100810257 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0548 4 5307136 5310626 Gso6g0542 6 5050414 5054320 GST