Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0534 ATGAAAATGAAGCTTCTCCTCATGCTTCTTCTTGTTTTTCTTCTTCTTCACCAACCCATTTGGGCTGCAGACCCTCCTGCTTTCTCTCCAGGGGAGGAACAGCATCACATGAATAAGAAAGTGGTAATAGCCATCGTCGTAGCCACCACTGCACTTGCTGCACTCATTTTCACTTTCTTATGCTTCTGGATTTATCATCATACCAAGTATCCAACAAAATCCAAATCCAAAAATGTTCAAAGTCCAGATGCAGAGAAGGGGATCACCTTAGCACCGTTTTTGAATAAATTCAGTTCCATCAAGATTGTTGGCATGAACGGGTCTGTTCCAATAATTGACTATAAGCAAATAGAAAAAACGACAAACAATTTTCAAGAAAGTAACATCTTGGGTGAGGGAGGCTTTGGACGTGTTTACAGGGCTCGTTTGGATCATAACTTTGATGTTGCAGTCAAGAAACTACACTGTGAGACTCAACATGCTGAGAGAGAATTCGAGAACGAGGTGAATTTGTTAAGCAAAATTCAGCATCCGAATATAATTTCTTTACTGGGTTGTAGCATTGATGGTTACTCGAGGTTCATTGTCTATGAGCTGATGCAAAATGGATCACTGGAAACCCAGTTACATGGACCTTCTCATGGCTCGGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCAGTGATCCATAGAGACATGAAATCTTCTAATATTCTCTTAGATGCAAACTTCAATGCCAAACTGTCTGATTTTGGTCTTGCCTTAACTGATGGGTCTCAAAGCAAGAAGAACATTAAACTATCGGGTACCTTAGGATACGTAGCACCGGAGTATCTTCTAGATGGTAAATTAAGTGATAAAAGTGATGTGTATGCTTTTGGGGTTGTGCTATTGGAGCTCCTACTAGGAAGGAAGCCAGTGGAAAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACGGACAGATCCAAGCTTCCAAACATTGTGGATCCAGTGATTAAGAATACAATGGATCCCAAACACTTGTACCAGGTTGCTGCTGTGGCTGTGCTGTGCGTGCAACCAGAACCTAGTTACCGTCCACTGATAACAGATGTTCTTCATTCACTCATCCCTCTTGTTCCGATTGAGCTTGGAGGAACACTAAGAGTTTCACAAGTAAAGTGA 1239 0.4237 MKMKLLLMLLLVFLLLHQPIWAADPPAFSPGEEQHHMNKKVVIAIVVATTALAALIFTFLCFWIYHHTKYPTKSKSKNVQSPDAEKGITLAPFLNKFSSIKIVGMNGSVPIIDYKQIEKTTNNFQESNILGEGGFGRVYRARLDHNFDVAVKKLHCETQHAEREFENEVNLLSKIQHPNIISLLGCSIDGYSRFIVYELMQNGSLETQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLALTDGSQSKKNIKLSGTLGYVAPEYLLDGKLSDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNIVDPVIKNTMDPKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPIELGGTLRVSQVK* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0534 412 Pfam Protein tyrosine and serine/threonine kinase 127 361 IPR001245 GO:0004672|GO:0006468
Gso6g0534 412 CDD STKc_IRAK 130 397 - -
Gso6g0534 412 SUPERFAMILY Protein kinase-like (PK-like) 100 394 IPR011009 -
Gso6g0534 412 ProSitePatterns Protein kinases ATP-binding region signature. 130 153 IPR017441 GO:0005524
Gso6g0534 412 SMART serkin_6 124 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0534 412 PANTHER BNAA04G14780D PROTEIN 29 410 - -
Gso6g0534 412 PANTHER OS01G0750732 PROTEIN 29 410 - -
Gso6g0534 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 245 257 IPR008271 GO:0004672|GO:0006468
Gso6g0534 412 Gene3D Transferase(Phosphotransferase) domain 1 200 399 - -
Gso6g0534 412 ProSiteProfiles Protein kinase domain profile. 124 395 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0534 412 Gene3D Phosphorylase Kinase; domain 1 89 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0534 Gso-Chr6 4941222 4956199 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0534 19 340 Receptor kinase-like Gene Family AT1G80640 48.048 2.82e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Gso6g0534 PK_Tyr_Ser-Thr 8.3e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0534 - - gmx:100784795 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0540 4 5212559 5216457 Gso6g0534 6 4941222 4956199 GST
Gso14g0970 14 13225491 13230359 Gso6g0534 6 4941222 4956199 PCT
Gso17g1826 17 36522343 36527620 Gso6g0534 6 4941222 4956199 PCT
Gso6g0534 6 4941222 4956199 Gso14g0970 14 13225491 13230359 PCT
Gso6g0534 6 4941222 4956199 Gso17g1826 17 36522343 36527620 PCT