Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gso6g0532 | ATGGCCAGATCACAACAGCGATACCGAGGCGTCCGACAAAGGCATTGGGGCTCTTGGGTCTCCGAAATTCGACACCCCATATTGAAAACTAGGATATGGCTAGGGACTTTTGAAACTGCTGAGGATGCAGCTAGAGCCTATGATGAAGCAGCAAGGCTAATGTGTGGCACAAGGGCAAGAACAAACTTCCCTTACAACCCCAATGCGTCTCAGTCTTCATCTTCCAAGCTTCTCTCAGCAACTTTAACTGCAAAACTGCATAGGTGCTACATGGCTTCTTTGCAAATGACAAGGCCATCATCACAGCCAGAGACTCAGAGAGTGGTGGCTTCACCAAATGTCATCACCTCCTCGGCAAGCAACTTCTCCATGAAGAGTAACGAAACTGAGACAATGTTGTTGCCACAGAAGAGACAAGAGGAGGAGCAAGAAGGAGAGGGGAATTGGGTTTTCAAGAAGGTTAAGGTGGAAAATGCTCAACAGTTCAAGCCTCTTGAAGAGGACCACATCGAGCAAATGATAGAGGAGTTGCTGCATTACGGGTCCATTGAACTATGCTCTGTGATTCCACCACAGGCTCTTTGA | 585 | 0.4769 | MARSQQRYRGVRQRHWGSWVSEIRHPILKTRIWLGTFETAEDAARAYDEAARLMCGTRARTNFPYNPNASQSSSSKLLSATLTAKLHRCYMASLQMTRPSSQPETQRVVASPNVITSSASNFSMKSNETETMLLPQKRQEEEQEGEGNWVFKKVKVENAQQFKPLEEDHIEQMIEELLHYGSIELCSVIPPQAL* | 195 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gso6g0532 | 194 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 188 | - | - | |
Gso6g0532 | 194 | Gene3D | AP2/ERF domain | 6 | 65 | IPR036955 | GO:0003700|GO:0006355 | |
Gso6g0532 | 194 | SUPERFAMILY | DNA-binding domain | 7 | 66 | IPR016177 | GO:0003677 | |
Gso6g0532 | 194 | CDD | AP2 | 6 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0532 | 194 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF003-LIKE | 1 | 188 | - | - | |
Gso6g0532 | 194 | PRINTS | Ethylene responsive element binding protein signature | 8 | 19 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0532 | 194 | PRINTS | Ethylene responsive element binding protein signature | 30 | 46 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0532 | 194 | ProSiteProfiles | AP2/ERF domain profile. | 7 | 64 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0532 | 194 | SMART | rav1_2 | 7 | 70 | IPR001471 | GO:0003700|GO:0006355 | |
Gso6g0532 | 194 | Pfam | AP2 domain | 7 | 56 | IPR001471 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gso6g0532 | Gso-Chr6 | 4927669 | 4928903 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gso6g0532 | 1 | 194 | AP2-EREBP Transcription Factor Family | AT5G25190 | 63.636 | 2.78e-81 | 238 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Gso6g0532 | AP2 | 6.4e-12 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gso6g0532 | - | - | gmx:100819158 | 357.451 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Gso4g0538 | 4 | 5198619 | 5199946 | Gso6g0532 | 6 | 4927669 | 4928903 | GST | |
Gso14g0968 | 14 | 13122804 | 13124406 | Gso6g0532 | 6 | 4927669 | 4928903 | PCT | |
Gso17g1828 | 17 | 36564727 | 36566032 | Gso6g0532 | 6 | 4927669 | 4928903 | PCT | |
Gso6g0532 | 6 | 4927669 | 4928903 | Gso14g0968 | 14 | 13122804 | 13124406 | PCT | |
Gso6g0532 | 6 | 4927669 | 4928903 | Gso17g1828 | 17 | 36564727 | 36566032 | PCT |