Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0529 ATGTGTCTCCTCCAGTATACTACTTTTTCTTTCCATTTAAAGGTAGGTTTCATGAATCTACCGATTACAAGGGCACGAGGAGAGTACTCTGCAATGGAAACACTGAGCCACGAGTCTCCCTTCTATGATAATAACCTCTCCGCTGAAAAGACTCCTCCAAGTCCAAGCACACCATTGCAGAATCCACAAGAGAAGAAACAACTATCTGTTAAGGAACAAGAAGAGGCAAAAACAGATACTTTATTGGATCTAAATGCCTTTGGTGATGATTCTGCTGTTGGGTGCAGTCCAGTGCTGAATCTGATCACGTGTTTGGACACAGATTTGCCAAGCACTTCCTCAGAAAACCAACATGGCTCAGAGCCACGAGTGTTCTCTTGCAACTACTGTCAGAGAAAGTTCTACAGTTCACAAGCTCTTGGGGGACACCAAAACGCCCACAGGAGAGAGAGGTCAATTACAAAGAGAGGTCATCATAGATCAGGATCACGTGGCATGATGGCCTCAGCAACAACAGCTTTCGGAATTCCCTTCCTCCATAATCACCTTCACCACTATGCCACTATGGCTTCTCTCCCTCTCCATGGTGGTTGTAGTAATAATAAACCACTTGGAATTAAGGCTCACTCCATCATTCACAAGCCTTCTTCAAATTCTTCTCATATTTCATTCAATGGGTTTGGAACCACTTTTGGACATCATGGATGGTCAAGACCCCTTATTGATCAACAACCTAGAATAGGGAAGCTAACGATGGAAAGTTGTCACAAAACATCACGAGGTAATGTTGGAAAATTCGATGCGGTGAAAACGACCATGATTAATTCAGCGACCATTGAAGAAATCAGTGGATATAATATGATTAGTGGAGTTACTCGTTTTAAGACTAATCAAGAGGAAATGAAACACCTTGATTTGTCCCTAAAGCTGTAA 933 0.4244 MCLLQYTTFSFHLKVGFMNLPITRARGEYSAMETLSHESPFYDNNLSAEKTPPSPSTPLQNPQEKKQLSVKEQEEAKTDTLLDLNAFGDDSAVGCSPVLNLITCLDTDLPSTSSENQHGSEPRVFSCNYCQRKFYSSQALGGHQNAHRRERSITKRGHHRSGSRGMMASATTAFGIPFLHNHLHHYATMASLPLHGGCSNNKPLGIKAHSIIHKPSSNSSHISFNGFGTTFGHHGWSRPLIDQQPRIGKLTMESCHKTSRGNVGKFDAVKTTMINSATIEEISGYNMISGVTRFKTNQEEMKHLDLSLKL* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0529 310 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 32 310 - -
Gso6g0529 310 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 32 310 IPR044246 GO:0009788
Gso6g0529 310 MobiDBLite consensus disorder prediction 41 66 - -
Gso6g0529 310 MobiDBLite consensus disorder prediction 140 165 - -
Gso6g0529 310 SUPERFAMILY beta-beta-alpha zinc fingers 122 153 IPR036236 -
Gso6g0529 310 ProSiteProfiles Zinc finger C2H2 type domain profile. 125 152 IPR013087 -
Gso6g0529 310 Gene3D Classic Zinc Finger 105 173 - -
Gso6g0529 310 MobiDBLite consensus disorder prediction 41 74 - -
Gso6g0529 310 ProSitePatterns Zinc finger C2H2 type domain signature. 127 147 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0529 Gso-Chr6 4888739 4889927 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0529 99 310 C2H2 Transcription Factor Family AT5G25160 40.708 1.30e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gso6g0529 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0529 - - gmx:100783199 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0535 4 5151384 5152501 Gso6g0529 6 4888739 4889927 GST
Gso14g0963 14 12943017 12944520 Gso6g0529 6 4888739 4889927 PCT
Gso17g1832 17 36693955 36695603 Gso6g0529 6 4888739 4889927 PCT
Gso6g0529 6 4888739 4889927 Gso14g0963 14 12943017 12944520 PCT
Gso6g0529 6 4888739 4889927 Gso17g1832 17 36693955 36695603 PCT