Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0528 ATGACCGTAGAGAAGAAAATGAATGATTCCGGCGACGAGTTTCCCGTCGGAATGCGTGTTCTCGCCGTCGACGATGATCCCACTTGCTTATTGGTTCTGGAAACTCTCCTCCGAAGATGTCAATATCATGCAACCACGACTAATCAAGCAATAAAGGCGTTGGCGCTGTTGAGAGAACACAAAGACAAGTTTGACCTGGTAATTAGTGATGTGCACATGCCAGACATGGATGGATTTAAGCTGCTTGAGCTAGTGGGACTTGAGATGGATCTTCCTGTCATAATGTTATCTGCAAATGGTGATACGAAGCTGGTGATGAAGGGGATTTCTCATGGGGCCTGTGATTATCTGCTGAAACCTGTAAGAATGGAGGAGCTCAAGAACATTTGGCAGCATGTAATCAGGAGGAAGAAGTTTGACTCAAAGGAGAAGAACAAAACCCGCAACATAGACAAACCTACTTCAAACAGTAGCAATGGACTAGGGTCATCAGGAACAGGAAATTCTGATCACAATGAGAAGCTGACTAAGAAAAGGAAGGATCAAGATGAAGACGAAGATGAGGAGCAGGAGAATGATCATGACAATGACGACCCATCAGCCCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAATTTGTTGCTGCCGTTAATCAGCTAGGCATTGACAAGGCTGTACCTAAAAAAATTCTCGATTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCAAGCCATCTTCAGAAGTATAGGCTTTATCTGAAAAGAATTAGCTGTGTGGCTAACCAACAAGCCAATATGGTGGTGGCCTTAGGGGGTGCCGATCCATCCTATTTGAGAATGAATTCTGTGAGCGGGGTTGGACATATACAATCAATAAGTGGTTCTGGACAGCTTCATAACAATGCTTTCAGATCCTTTCCACCTAGTGGGATAATTAATAGATTGAATACTCCTGCTGGTTTAAATGTGCATGGATTTCCTTCTGGAGTACTTCAATTGAGTCAATCACAAAATTTAAAAAACACAAATGATAATCTTAAGTTCCTGTCAGCCATTGTTCCTGCTAATCAGAATGGTGTTCATGGAATGACAGTATCTGTAGGGCTTGATCAACTGCAAAACAATAAGGGTGTTATGTCTGTTCAAAACCTGACTACTGTTTTTGATGCCAAAACAACTTTTCCCATCTCGAATAAACTCCCAGATCCAAGACCAAAAATAACCAACTCTGGCTCTCACACTCCAGATGTGAGTTTCTCAAACAATGCCTTGATGTTGGAACCACGCCCTCAAGGCACACAAGGGAGTGTAAGAATTGAAACTTTATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTGTCTTTGCTGGATCAAGGTAGATATAGTGATAATTGGGCAAGTACTGTGCAGCCATCTGTGATCCAGACAAACTCTTACCCTCCAAGTGAATGTTTTGGACAGACTAATATACCTCCTACAGATAACATGGCTTCTGTACCCTTGCAAGGTGGGAATCTAAGTGGTGCGTCCATCACTTCACTGTCCAGGCAATCCCATGATTCAATGACAGATATGCACTCTGAAGGAGTGACTTTTACCAACAGACCTGGGCATATAAGCAGTAATGTGCCATATCAAGGGTGGCATGACAATAATCAGGATGCTACTCACCATTCAAATATTTTGTCAATAAACTCACTGACTCCAGTCAATGGTGCTGCTGTTCCAGCTGGCCATGCAGCAATGAACTCAGCCTTACACAGAAACTTGGACTTTAATTATTGTGATCCCTTACAAATGAAGCATGAGGGGTTTGTGGAGTTAGCTGACGAGGCCTTATCGAAACAACATCAGGGGAATATCATGAACCTACCGAAATCTCAACAAAGTCATTTCTCTAATAATCTTGGTTCACTGGAAGACTTGGTCAGTTCAATGATGAAACAGGAAAATGATAAGATGAAATTATTGGATGGAAACCTCATTTGCAATAATTACTCTGGTGGGTTATCTCGATGTGATAGCAGGTTTAGCAGCACATTCCAGAATATCATGCATCCTCGCTGA 2091 0.4237 MTVEKKMNDSGDEFPVGMRVLAVDDDPTCLLVLETLLRRCQYHATTTNQAIKALALLREHKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSANGDTKLVMKGISHGACDYLLKPVRMEELKNIWQHVIRRKKFDSKEKNKTRNIDKPTSNSSNGLGSSGTGNSDHNEKLTKKRKDQDEDEDEEQENDHDNDDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQQANMVVALGGADPSYLRMNSVSGVGHIQSISGSGQLHNNAFRSFPPSGIINRLNTPAGLNVHGFPSGVLQLSQSQNLKNTNDNLKFLSAIVPANQNGVHGMTVSVGLDQLQNNKGVMSVQNLTTVFDAKTTFPISNKLPDPRPKITNSGSHTPDVSFSNNALMLEPRPQGTQGSVRIETLSSSVASQHSEFSLSLLDQGRYSDNWASTVQPSVIQTNSYPPSECFGQTNIPPTDNMASVPLQGGNLSGASITSLSRQSHDSMTDMHSEGVTFTNRPGHISSNVPYQGWHDNNQDATHHSNILSINSLTPVNGAAVPAGHAAMNSALHRNLDFNYCDPLQMKHEGFVELADEALSKQHQGNIMNLPKSQQSHFSNNLGSLEDLVSSMMKQENDKMKLLDGNLICNNYSGGLSRCDSRFSSTFQNIMHPR* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0528 696 Gene3D - 200 263 - -
Gso6g0528 696 CDD REC_typeB_ARR-like 20 134 - -
Gso6g0528 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR10 1 655 - -
Gso6g0528 696 SUPERFAMILY Homeodomain-like 202 261 IPR009057 -
Gso6g0528 696 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 204 257 IPR006447 GO:0003677
Gso6g0528 696 PIRSF RR_ARR_type-B 1 678 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso6g0528 696 SUPERFAMILY CheY-like 17 141 IPR011006 -
Gso6g0528 696 SMART REC_2 18 130 IPR001789 GO:0000160
Gso6g0528 696 Gene3D - 17 154 - -
Gso6g0528 696 MobiDBLite consensus disorder prediction 151 170 - -
Gso6g0528 696 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 260 IPR017930 -
Gso6g0528 696 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 655 IPR045279 GO:0009736
Gso6g0528 696 Coils Coil 172 192 - -
Gso6g0528 696 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Gso6g0528 696 Pfam Response regulator receiver domain 20 128 IPR001789 GO:0000160
Gso6g0528 696 Pfam Myb-like DNA-binding domain 206 256 IPR001005 -
Gso6g0528 696 MobiDBLite consensus disorder prediction 141 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0528 Gso-Chr6 4866363 4871382 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0528 1 454 Response Regulator Gene Family AT2G25180 53.488 2.12e-136 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso6g0528 Response_reg 1.9e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0528 - K14491 gmx:100809002 1369.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0534 4 5134408 5138898 Gso6g0528 6 4866363 4871382 GST
Gso14g0962 14 12817767 12823700 Gso6g0528 6 4866363 4871382 PCT
Gso17g1835 17 36770504 36776719 Gso6g0528 6 4866363 4871382 PCT
Gso6g0528 6 4866363 4871382 Gso14g0962 14 12817767 12823700 PCT
Gso6g0528 6 4866363 4871382 Gso17g1835 17 36770504 36776719 PCT