Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0525 ATGGCAAAGTGTCATAAGAACAACGTCGGATCCATCGCTCTCGACCACCGCCACTCCACCAAAAATGCCACCACCGGCGGCCACTTCCGCGTGCTCCGCCGCTTGATCTTCGACGCCGTCAGCTGCGGCGGCACCTCCCGCTACCGGTATCGCCAGCGCGGCGGCGCCGACAACGATGACGGCGACTTCAACTCGGCGGCGAGCCACACAGAGAAGGAGGAGAGGTCCGAGAAGCTATCGGATCTGCTGAACGCAGCGGAGAGCAAAACAGCGACGGAAGAGGCATTGGCGGAGCTGAAGCAAGTGGTGAAGGAGCTGCGCGAAGAAGACTTCACGAAGCGGCGAATCGCCGCTGCGAGAGTGAGGTCACTCGCGAAGGAAGATTCGGAAGCCAGAGCGAATCTCGCAGTGCTCGGAGCAATTCCTCCTCTCGTCGGAATGCTCGATGATTCAGAAGACGCTCATTCTCAAATCGCATCGCTCTACGCTTTGCTCAATCTCGGAATCGGCAACGATGCAAATAAAGCGGCTATAGTGAAAATTGGCGCGGTACACAAGATGCTGAAGCTAATTGAATCGAGCGGTTCAGATTCGTCGGTGTCTGAAGCGATCGTTGCAAATTTCCTTGGCTTAAGCGCTTTGGATTCGAACAAACCGATAATTGGATCCTCCGGTGCAATACCGTTCCTAGTTAGAACCCTAAAGAATTTAAACGAAAGTAAAATCGAGTCCAAATCACAAATGAAGCAAGATGCTATGCGAGCTTTGTACAATCTCTCGATCTGTCAGAGCAACGTTTCAGTAGTTTTGGAAACCGATTTGGTTTTGTTTTTAGTGTCCACAATAGGAGACATGGAAGTGAGTGAGAGGAGTCTCGCGATTCTAAGCAATTTAGTGTCGACTCCGGAGGGTAGAAAAGCGATTAGCAGCGTTAGCGACGCGATTCCGATTCTTGTGGACGCGTTGAGTTGGACGGACTCGCCGGAGTGCCAGGAGAAGGCGTCGTACGTTTTGATGATCATGGCGCACAAAGCGTACGGTGACAGGCGGGTGATGATAGAGGCAGGGGTAGTTTCGTCGCTGCTTGAATTAACACTTGTGGGAACCACACTGGCTCAGAAGAGAGCCTCCAGAATATTAGAGTGTTTGAGGGTAGACAAAGGGAAACAAGTTTCTGGAAGCTACGGTGGAAACTTTAACTTGGGTGTGTCTGCTCCTATTTGTGGATCTTCTTCATCGAATGGAGGGAAAGGGTGTTTGGTTGTGGATGATGGGATGATGAGTGAGGAAAAGAAAACGGTGAAGCAGTTAGTGCAACAGAGTTTGCAGAGCAATATGATGAAGATTGTCAAGAGGGCTAACTTGCGTCAGGATTTTCTTCCATCTGGGAATTTTGCTTCACTCACTTCCACTTCCACTTCCAAGAGCCTCCCATTTTGA 1440 0.5076 MAKCHKNNVGSIALDHRHSTKNATTGGHFRVLRRLIFDAVSCGGTSRYRYRQRGGADNDDGDFNSAASHTEKEERSEKLSDLLNAAESKTATEEALAELKQVVKELREEDFTKRRIAAARVRSLAKEDSEARANLAVLGAIPPLVGMLDDSEDAHSQIASLYALLNLGIGNDANKAAIVKIGAVHKMLKLIESSGSDSSVSEAIVANFLGLSALDSNKPIIGSSGAIPFLVRTLKNLNESKIESKSQMKQDAMRALYNLSICQSNVSVVLETDLVLFLVSTIGDMEVSERSLAILSNLVSTPEGRKAISSVSDAIPILVDALSWTDSPECQEKASYVLMIMAHKAYGDRRVMIEAGVVSSLLELTLVGTTLAQKRASRILECLRVDKGKQVSGSYGGNFNLGVSAPICGSSSSNGGKGCLVVDDGMMSEEKKTVKQLVQQSLQSNMMKIVKRANLRQDFLPSGNFASLTSTSTSKSLPF* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0525 479 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 479 - -
Gso6g0525 479 SMART arm_5 262 300 IPR000225 GO:0005515
Gso6g0525 479 SMART arm_5 214 261 IPR000225 GO:0005515
Gso6g0525 479 SMART arm_5 128 169 IPR000225 GO:0005515
Gso6g0525 479 SMART arm_5 301 343 IPR000225 GO:0005515
Gso6g0525 479 SMART arm_5 171 213 IPR000225 GO:0005515
Gso6g0525 479 MobiDBLite consensus disorder prediction 52 78 - -
Gso6g0525 479 Coils Coil 69 109 - -
Gso6g0525 479 SUPERFAMILY ARM repeat 98 384 IPR016024 -
Gso6g0525 479 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 225 274 IPR000225 GO:0005515
Gso6g0525 479 Gene3D - 63 243 IPR011989 -
Gso6g0525 479 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 479 - -
Gso6g0525 479 MobiDBLite consensus disorder prediction 48 78 - -
Gso6g0525 479 Gene3D - 244 393 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0525 Gso-Chr6 4824826 4826801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0525 108 390 U-box Gene Family AT1G67530 31.142 1.42e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0525 - - gmx:100796229 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0529 4 5077181 5079027 Gso6g0525 6 4824826 4826801 GST
Gso14g0955 14 12545713 12549167 Gso6g0525 6 4824826 4826801 PCT
Gso17g1841 17 36992034 36994597 Gso6g0525 6 4824826 4826801 PCT
Gso6g0525 6 4824826 4826801 Gso14g0955 14 12545713 12549167 PCT
Gso6g0525 6 4824826 4826801 Gso17g1841 17 36992034 36994597 PCT