Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0518 ATGGAAATGGAACCGACGTGCGTCGACACTTCCCTCAACCTTAACGTTATTCCTTCCCCACACATCGACCACCTCGCGGGAGAAGTTTTGTTTGAAGAGTTGCGGCGTCTAAGCAGTGAGAACAAGAGGCTAACTGAGACGCTGAACCACTTGTGCGAGAGCTATGTTGCCTTGCAGAAACATTTGAGTGAATTCAGCCAACTTAGGAACGCAAATTTTGATAAAGAAGGAACTTGTGCAGTTCCGTCGCTAAAGAGAAAGCCCGAGAGTGAGAATTGTGTGAATCTGTTTGGTACTGAGTGCAACACCATCACAGAGGAAGAAACATTCAAAAGGCCCAAGCATAGCACCGAGCCAAAGGTTTCCAAAGTTCTTACACGGACAGATGCATCTGATACTGGCTTATATGTGAGGGACGGATATCAGTGGAGAAAATACGGTCAGAAAGTCACTAGAGATAACCCTTCTCCTAGGGCTTACTTCAAGTGTTCATATGCCCCTAGCTGTCCAGTAAAAAAGAAGGTGCAAAGAAGTGTAGAAGATCCAAGTGTGTTGGTAACAACTTACGAAGGGGAGCACAACCATGGGCAACAACATCAAACTGCAGAAATATCAATTAATTCATCAAGCAAAAGTGAAACACCTAGGCCTGCAGTTTCACCCTCAGCCATGAATATTCGGAGTAGTGCAGCAGCAGGTCCAATTGTAACACTTGACTTGGTCAAGTCAAAAGTTGTTGACATTAATGCGCAAAAGTCATCTCTCCAGCAGTTTTTAGTTCACCAAATGGCTACTTCTTTGACAAGAGATCCTAATTTCACAGCCGCACTTGCTTCTGCCATCTCTGGAAGAATTCTAGATGATACTTCTGTGGGAAAACGTTGA 885 0.4441 MEMEPTCVDTSLNLNVIPSPHIDHLAGEVLFEELRRLSSENKRLTETLNHLCESYVALQKHLSEFSQLRNANFDKEGTCAVPSLKRKPESENCVNLFGTECNTITEEETFKRPKHSTEPKVSKVLTRTDASDTGLYVRDGYQWRKYGQKVTRDNPSPRAYFKCSYAPSCPVKKKVQRSVEDPSVLVTTYEGEHNHGQQHQTAEISINSSSKSETPRPAVSPSAMNIRSSAAAGPIVTLDLVKSKVVDINAQKSSLQQFLVHQMATSLTRDPNFTAALASAISGRILDDTSVGKR* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0518 294 ProSiteProfiles WRKY domain profile. 139 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0518 294 MobiDBLite consensus disorder prediction 192 222 - -
Gso6g0518 294 Gene3D WRKY domain 121 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g0518 294 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 287 - -
Gso6g0518 294 SUPERFAMILY WRKY DNA-binding domain 136 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g0518 294 Coils Coil 34 54 - -
Gso6g0518 294 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 1 287 IPR044810 GO:0003700
Gso6g0518 294 Pfam WRKY DNA -binding domain 139 195 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0518 294 SMART WRKY_cls 137 197 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0518 Gso-Chr6 4719582 4721390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0518 8 285 WRKY Transcription Factor Family AT1G80840 44.595 3.04e-72 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g0518 WRKY 3.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0518 - - gmx:100127373 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0523 4 4977891 4979586 Gso6g0518 6 4719582 4721390 GST
Gso14g0896 14 10618324 10621002 Gso6g0518 6 4719582 4721390 PCT
Gso17g1884 17 37720213 37722527 Gso6g0518 6 4719582 4721390 PCT
Gso6g0518 6 4719582 4721390 Gso14g0896 14 10618324 10621002 PCT
Gso6g0518 6 4719582 4721390 Gso17g1884 17 37720213 37722527 PCT