Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0517 ATGATGGATCAAGAGGTAGAAACGCTTGAAGCGAAGCTGCAACGTGTGAAGGAGGATAATCGTACCCTTAGAGAGATGCTGGAAACTCTGAGCAGCAAATGCGAGAAGCTTCAGTCTCATCTTCAAGAGATCAATAATGAAGAACAAGAAGTGAGCACAAAATCAGACCAAAGTGGATCAGTATTATTAGCTAGAGCCGAGTTTCCCATAGCACAAAAGCCATCACAAATCTTTGTTAAAACCCACCCCAAGGACAATAGTTTGATGGTAAAAGATGGTTATCAGTGCAAGAAGTATGGACAGAAGAAGGTTACCAAAGACAATCCCTCGCCTAGAGCTTATTACAAGTGCTACCTGGCTCCTAGCTGCCCCGTCAAGAAAAGGGTGCAAAGAAGCTTACAGGATAAGTCTTTCCTTGTTGCAACTTATGAAGGAAAGCACAACCATGGTGTTTTTCGTGATTTACTTAAGCCATCATCTTCTATACCAGAAACCTCAATAATGGACAATTATTTACCTATGACAGTCATGCCAAATGACAAATTAGATACTATGAACATAGACCTTTGTCTATGCAATCGAGCTCAAACAGATATAAGACGTTGTGATGATATTAAAGAACAGAACGACCGTGGCAGCAACAGCAAAATTGAAGAATATGTAAGTTCTCCAGTCAAAGATCCTGACTTCATCATGCCATTAGCTGAAGCAGTTGTCCACTCCCTCAATAGCCAGAGTTATAAGCAAGTGGGTCTTAACCTGAGTTTGGGTCTTCCAGAACCCCACCACTAG 792 0.4154 MMDQEVETLEAKLQRVKEDNRTLREMLETLSSKCEKLQSHLQEINNEEQEVSTKSDQSGSVLLARAEFPIAQKPSQIFVKTHPKDNSLMVKDGYQCKKYGQKKVTKDNPSPRAYYKCYLAPSCPVKKRVQRSLQDKSFLVATYEGKHNHGVFRDLLKPSSSIPETSIMDNYLPMTVMPNDKLDTMNIDLCLCNRAQTDIRRCDDIKEQNDRGSNSKIEEYVSSPVKDPDFIMPLAEAVVHSLNSQSYKQVGLNLSLGLPEPHH* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0517 263 ProSiteProfiles WRKY domain profile. 85 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0517 263 Pfam WRKY DNA -binding domain 91 149 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0517 263 Gene3D WRKY domain 75 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g0517 263 PANTHER WRKY TRANSCRIPTION FACTOR 49 3 242 - -
Gso6g0517 263 SUPERFAMILY WRKY DNA-binding domain 87 151 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g0517 263 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 3 242 IPR044810 GO:0003700
Gso6g0517 263 SMART WRKY_cls 90 151 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0517 263 Coils Coil 6 57 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0517 Gso-Chr6 4709329 4710929 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0517 65 249 WRKY Transcription Factor Family AT1G80840 39.487 1.06e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g0517 WRKY 4e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0517 - - gmx:121175041 528.48