Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0497 ATGGCTTCCAAGCTCTGCGACTCATGCAAATCAGCCACTGCTACCTTGTACTGCCGCCCCGACGCGGCCTTCCTCTGCGGCGCCTGTGACTCTAAGGTTCATGCCGCCAACAAGCTCGCATCGCGCCACCCGCGCGTCGTGCTCTGCGAGGTGTGCGAGCAGGCGCCCGCGCATGTGACCTGTAAAGCCGACGCCGCCGCGCTCTGCCTTGCCTGCGATCGCGATATCCACTCCGCCAACCCCCTCGCCAGCCGCCACGAGCGCATCCCCGTCACGCCGTTCTTCGAGTCCGTACATTCAGTCAAGGCCTCCTCGCCGATCAACTTCCACCACCGCTTCTTCTCCGACGCCGACGCTGATGCTGACGTCAGCACCGAGGAGGCCGAGGCCGCGTCATGGCTGCTACCTAATCCAAAGACAGATCTAAATTCGTCTCAGTACTTGTTCTCCGAAACCGAACCGGTTCCTTACATAGATCTGGATTACGCGGCCATGGATCCGAAGACGGAGCAGAAAAGTTCCGCCACCGCCGACGGCGTCGTTCCGGTGCAGAGCAACTTCGAGCCGTTCACCTACGGTTACAAGTACAACACTACTCTCTCACAGTCACAGTCTCATATGAGCCAGAGTGTATCTTCTCCGTCGTCGATGGAAGTTGGAGTTGTGCCGGACGGGAACACGATGTCGGAGATATCGAACTGCAGCTACAGCAAAGTGGCACCGGTGACGGTGACGGCGCAGTTCTCGGCGGCGGATAGGGAGGCTAGAGTGTTGAGGTACAGGGAGAAGAGGAAGAACCGAAAGTTCGAGAAGACCATTCGTTACGCATCGAGAAAAGCGTATGCCGAAACGAGGCCAAGAATCAAAGGAAGGTTCGCGAAACGCACTGATGCGGACCCTCTGGCTGGATACGGCGTCGTTCCGTCGTGTTGA 933 0.5863 MASKLCDSCKSATATLYCRPDAAFLCGACDSKVHAANKLASRHPRVVLCEVCEQAPAHVTCKADAAALCLACDRDIHSANPLASRHERIPVTPFFESVHSVKASSPINFHHRFFSDADADADVSTEEAEAASWLLPNPKTDLNSSQYLFSETEPVPYIDLDYAAMDPKTEQKSSATADGVVPVQSNFEPFTYGYKYNTTLSQSQSHMSQSVSSPSSMEVGVVPDGNTMSEISNCSYSKVAPVTVTAQFSAADREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTDADPLAGYGVVPSC* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0497 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 2 309 IPR045281 GO:0009909
Gso6g0497 310 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 2 309 - -
Gso6g0497 310 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Gso6g0497 310 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270
Gso6g0497 310 Pfam CCT motif 253 295 IPR010402 GO:0005515
Gso6g0497 310 CDD Bbox1_BBX-like 5 48 - -
Gso6g0497 310 ProSiteProfiles CCT domain profile. 253 295 IPR010402 GO:0005515
Gso6g0497 310 SMART bboxneu5 1 48 IPR000315 GO:0008270
Gso6g0497 310 SMART bboxneu5 49 91 IPR000315 GO:0008270
Gso6g0497 310 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Gso6g0497 310 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0497 Gso-Chr6 4574247 4575569 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0497 1 309 C2C2-CO-like Transcription Factor Family AT5G24930 53.243 5.82e-113 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gso6g0497 zf-B_box 5.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0497 - - gmx:100804201 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0503 4 4815231 4816636 Gso6g0497 6 4574247 4575569 GST