Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0488 ATGCTCGGCGAGATGGAGAATGATTCTATAGAGGACATGGACATTGAAGCCCTTCCTTCAATGTGGCCTCAAGATATTGGAACCGAGGTTGGGAAGCAGTTTAATATAGAAAAGGCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTTACAGATTTTACAGAAAAGGGCTCTTCTCAGTTGGCATATCTAATGAAGCAATGGGAGTACAAACAGGCCAGTGTCGTGCGTCTTCTCAGAGAAGAACTTGACAACCTAAGCAAGCAAAGGCAGGATGCTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACAATATGGGGGAGATAAGCGTCCAGTTTCTATATTGGATGAAGTTTATGATGGTATATGGCAAGATATACCTTGCAGGAAAAGTGATGTTGTGGTTCAAAACAAGAGGAGTGAGATTGATGTTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCGTTGCATTCAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAAGAGATACTTGAAGAAAAGTTGCATGAAAGAATAGCAAACATTGAAAGGCAGTCCTCTCCTGTGGAAGAACTCTCCCAGATCCTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACACGAGGAGGATATCATAGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAAGCTCAAGAATTTAAGAGAGAAGTTTTGGAAAAAGGACTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAGCCTGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACAAAACTCGATTGGGAGCAAAGACAACTCCTGGATGTCATGCTATCTTCGGGAGATTTGGTTCTTCAAATTATAAATGACATACTTGATCTTTCCAAGGTCGAGTCAGGAGTGATGAAATTGGAAGCTACAAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACCGCTGTGGTTTCATTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTTACCCATGAAGGCAGAGTTGGAATAAACCTTTACGTTGTGTCAAAGCCTAATTTTGCAAAAGCAGAAGCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGAAACAACGGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTTTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATTCTTCCATACAAGGTTTCAATCGCTTGTGATCATTCTGATGATCCGGATGAGCTTTCTGATTTGGAGAATAATGATGTCGCATCTGATGATACAATAGAGAGTTTCTTCCAATACCAACCACACACTTTGGGCTCTCTTTTCTCTTCTAATGGATCTAGCAGGACACAGAAGTTATTAACACACAAAATTGGCTACACCAGCTCACATAAACTTGGTGGATTTTCTGAGAGTTTATATTCAAAAGGGACATGTTCAGTTGATGATGCATCTTCTGTGGTTGATGCTCCGGAGACGTCTGAATTGGCTAGTTCATCTGGTCACAGCCTAGAAACAAAGAACAAAAGTTTGGTTAGAAGAGATAAACAGCATCAAGATAAGGCTCGTGCTTGGTCCTTTAATGGTTATGCAGATTCCTCTGAAGTTACTGTGTCAAACGGAGAAATGGCTGGAGCAACAAAGTCAAGTGAACCCCAACAAACATGTCAGGGTCAAGGGAAGGCAAACACAACTACTCAATGTGTTACAAGCAGCAGCACATCAGAAGTAACCAAATCCACAATAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAACAATGGAGTGGAAGCAGTACGTGCAGTTCAGCGCCACACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGGATGGTCTTCAGGAAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGTGATGCTGCAAGAAGTTCGGGAATTGAGGAAAGTCTACCAGATCCAGATTATGAATGTTATGTACCATTTACAAAGCGGGTCCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAACTGAAAGAATGTATTGAACAATACCTTGTAAATTTCAGCTAG 2853 0.4108 MLGEMENDSIEDMDIEALPSMWPQDIGTEVGKQFNIEKAGRDQDMLEEVTIIEEPTIVDFKRLMELTDFTEKGSSQLAYLMKQWEYKQASVVRLLREELDNLSKQRQDAELRKLEILEEHRFEEEQYGGDKRPVSILDEVYDGIWQDIPCRKSDVVVQNKRSEIDVEYDTVMYWKQRALHSEKQLEASIQREEILEEKLHERIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYCFIYNHFPSLHEEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQIINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAVVSLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGRVGINLYVVSKPNFAKAEAMNGDTEEQPYSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDHSDDPDELSDLENNDVASDDTIESFFQYQPHTLGSLFSSNGSSRTQKLLTHKIGYTSSHKLGGFSESLYSKGTCSVDDASSVVDAPETSELASSSGHSLETKNKSLVRRDKQHQDKARAWSFNGYADSSEVTVSNGEMAGATKSSEPQQTCQGQGKANTTTQCVTSSSTSEVTKSTIKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHTYDLILMDVCMPVMDGLQETKLIRTFEETGNCDAARSSGIEESLPDPDYECYVPFTKRVPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIEQYLVNFS* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0488 950 CDD REC_hyHK_CKI1_RcsC-like 804 942 - -
Gso6g0488 950 ProSiteProfiles Histidine kinase domain profile. 379 618 IPR005467 -
Gso6g0488 950 Coils Coil 92 119 - -
Gso6g0488 950 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Gso6g0488 950 ProSiteProfiles Response regulatory domain profile. 803 946 IPR001789 GO:0000160
Gso6g0488 950 PRINTS Bacterial sensor protein C-terminal signature 543 557 IPR004358 GO:0016310|GO:0016772
Gso6g0488 950 PRINTS Bacterial sensor protein C-terminal signature 578 596 IPR004358 GO:0016310|GO:0016772
Gso6g0488 950 PRINTS Bacterial sensor protein C-terminal signature 602 615 IPR004358 GO:0016310|GO:0016772
Gso6g0488 950 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 536 947 - -
Gso6g0488 950 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 533 - -
Gso6g0488 950 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 616 IPR003594 -
Gso6g0488 950 Gene3D - 360 437 - -
Gso6g0488 950 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Gso6g0488 950 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Gso6g0488 950 MobiDBLite consensus disorder prediction 708 735 - -
Gso6g0488 950 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Gso6g0488 950 SMART HKATPase_4 483 618 IPR003594 -
Gso6g0488 950 SMART REC_2 802 942 IPR001789 GO:0000160
Gso6g0488 950 CDD HATPase_EvgS-ArcB-TorS-like 488 615 - -
Gso6g0488 950 Gene3D - 438 621 IPR036890 -
Gso6g0488 950 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 426 616 IPR036890 -
Gso6g0488 950 MobiDBLite consensus disorder prediction 709 724 - -
Gso6g0488 950 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 536 947 - -
Gso6g0488 950 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 533 - -
Gso6g0488 950 Pfam Response regulator receiver domain 804 873 IPR001789 GO:0000160
Gso6g0488 950 Gene3D PAS domain 214 349 - -
Gso6g0488 950 MobiDBLite consensus disorder prediction 760 783 - -
Gso6g0488 950 Coils Coil 189 209 - -
Gso6g0488 950 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Gso6g0488 950 Gene3D - 795 947 - -
Gso6g0488 950 SUPERFAMILY CheY-like 802 946 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0488 Gso-Chr6 4484923 4492825 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0488 1 946 Histidine Kinase Gene Family AT5G10720 60.271 0.0 1117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso6g0488 HATPase_c 9.2e-30 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0488 - - gmx:100819520 1781.15