Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0484 ATGCTCGGCGAGATGGAGAATGATTCTATAGAGGACATGGACATTGAAGCCCTTCCTTCAATGTGGCCTCAAGATATTGGAACCGAGGTTGGGAAGCAGTTTAATATAGAAAAGGCTGGAAGGGACCAAGACATGTTAGAGGAGGTTACAATCATAGAGGAGCCAACTATAGTTGATTTCAAGCGTCTCATGGAGCTTACAGATTTTACAGAAAAGGGCTCTTCTCAGTTGGCATATCTAATGAAGCAATGGGAGTACAAACAGGCCAATGTCGTGCGTCTTCTCAGAGAAGAACTTGACAACCTAAGCAAGCAAAGGCAGGATGCTGAGCTCAGGAAGTTGGAGATATTGGAAGAGCATCGATTCGAGGAAGAACAATATGGGGGAGATAAGCGTCCAGTTTCTATATTGGATGAAGTTTATGATGGTATATGGCAAGATATACCTTGCAGGAAAAGTGATGTTGTGGTTCAAAACAAGAGGAGTGAGATTGATGTTGAGTATGACACTGTCATGTACTGGAAACAGCGAGCGTTGCATTCAGAGAAGCAGCTGGAGGCAAGTATCCAAAGAGAAGAGATACTTGAAGAAAAGTTGCATGAAAGAATAGCAAACATTGAAAGGCAGTCCTCTCCTGTGGAAGAACTCTCCCAGATCCTGAAGAGAGCAGATAATTTCTTGCATTTTATACTCCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATTGCTTTATCTATAATCATTTTCCAAGTTTACACGAGGAGGATATCATAGGAAAAACCGATGTTGAAATATTCACGGGAGCTGGTGTTAAGGAAGCTCAAGAATTTAAGAGAGAAGTTTTGGAAAAAGGATTACCTGCAAAAAGGGAAATCACTTTTGAGACAGAACTATTTGGGTCAAAGACATTTTTGATATATGTAGAGCCTGTGTTTAGCAAAGCAGGGGAGACAATTGGAATAAATTACATGGGAATGGATATAACAGATCAGGTGAGAAAAAGAGAAAGGATGGCAAAGATTCGGGAAGAGATTGCTGTTCAGAAAGCCAAGGAAACAGAACTGAATAAAACCATTCACATTACAGAGGAGACTATGCGAGCAAAACAAATGTTGGCAACAATGTCTCATGAGATAAGATCTCCATTGTCTGGGGTTGTTAGCATGGCTGAAATTCTTTCTAACACAAAACTCGATTGGGAGCAAAGACAACTCCTGGATGTCATGCTATCTTCTGGAGATTTGGTTCTTCAAATTATAAATGACATACTTGATCTTTCCAAGGTCGAGTCAGGAGTGATGAAATTGGAAGCTACAAAATTCCGGCCAAGAGAGGTAGTCAAGCATGTACTCCAGACCGCTGTGGTTTCATTGCAGAAAATATTAACCTTAGAAGGACATGTAGCAGATGATGTACCTATTGAGGTCATTGGTGATGTTTTAAGGATGCGGCAAATTCTCACAAATTTAATTAGCAATGCCATCAAGTTTACCCATGAAGGCAGAGTTGGAATAAACCTTTACGTTGTGCCAAAGCCTAATTTTGCAAAAGCAGAAGACATCCAAATGATGACTCCAAACCAATCAACTATGTCAGTGAATGGTGTAAAAGAAGAGAAACATCTCTCAAAACCTCAAAGTGGCAATGATGGAAATCTTCTTGATGGTTGTCAAAAACATGACGACCATCCCAGTCAAAACCATGCATTCAATGACGAATGTGGATCTCCGGCCAAAAGTGAATGCTCAATGAATGGAGACACTGAGGAGCAACCTTATTCAGCTGAAACAACGGTGTGGATACGTTGTGATGTATATGACACAGGCATAGGAATACCAGAAGATGCTATACCAACCTTATTTAAAAGGTACATGCAAGTCAGTGCAGACCACACTCGAAAGTATGGTGGCACAGGGCTAGGACTAGCAATATGCAAACAACTGGTTGAGTTGATGGGGGGTCAACTAACAGTTTCTAGCAAAGAACACTATGGTTCTACTTTCACTTTCATTCTTCCATACAAGGTTTCAATCGCTTGTGATCATTCTGATGATCCGGATGAGCTTTCTGATTTGGAGAATAATGATGTCGCATCTGATGATACAATAGAGAGTTTCTTCCAATTCCAACCACGCACTTTGGGCTCTCTTTTCTCTTCTAATGGATCTAGCAGGACACAGAAGTTATTAACACACAAAATTGGCTACACCAGCTCACATAAACTTGGTGGATTTTCTGAGAGTTTATATTCATTCCCCTCCAATGATATCATGTCAAAAGGGACATGTTCAGTTGATGATGCATCTTCTGTGGTTGATGCTCCGGAGACGTCTGAATTGGCTAGTTCATCTGGTCACAGCCTAGAAACAAAGAACAAAAGTTTGGTTAGAAGAGATAAACAGCATCAAGATAAGGCTCGTGCTTGGTCCTTTAATGGTTATGCAGATTCCTCTGAAGTTACTGTGTCAAACGGAGAAATGGCTGGAGCAACAAAGTCAAGTGAACCCCAACAAACATGTCAGGGTCAAGGGAAGGCAAACACAACTACTCAATGTGTTACAAGCAGCAGCACATCAGAAGTAACCAAATCCACAATAAAGCCTAAGATCCTTCTTGTTGAAGATAACAAGATTAATGTCATGGTGACACAGTCCATGATGAAGCAATTAGGCCATAGCATAGATGTTGTGAACAATGGAGTGGAAGCAGTACGTGCAGTTCAGCGCCACACTTATGACCTGATTCTGATGGATGTCTGCATGCCAGTTATGGATGGTCTTCAAGCAACAAAACTGATTCGGACTTTTGAGGAAACAGGCAATTGTGATGCTGCAAGAAGTTCGGGAATTGAGGAAAGTCTACCAGATCCAGATTATGAATGTTATGTACCATTTACAAAGCGGGTCCCCATTGTTGCGATGACAGCAAATGCTTTGTCAGAGAGTGCTGAAGAGTGTTTTGCAAATGGTATGGACTCATTTGTGTCAAAACCTGTGACTTTCCAAAAACTGAAAGAATGTATTGAACAATACCTTGTAAATTTCAGCTAG 3066 0.41 MLGEMENDSIEDMDIEALPSMWPQDIGTEVGKQFNIEKAGRDQDMLEEVTIIEEPTIVDFKRLMELTDFTEKGSSQLAYLMKQWEYKQANVVRLLREELDNLSKQRQDAELRKLEILEEHRFEEEQYGGDKRPVSILDEVYDGIWQDIPCRKSDVVVQNKRSEIDVEYDTVMYWKQRALHSEKQLEASIQREEILEEKLHERIANIERQSSPVEELSQILKRADNFLHFILQNAPVVIGHQDKELRYCFIYNHFPSLHEEDIIGKTDVEIFTGAGVKEAQEFKREVLEKGLPAKREITFETELFGSKTFLIYVEPVFSKAGETIGINYMGMDITDQVRKRERMAKIREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILSNTKLDWEQRQLLDVMLSSGDLVLQIINDILDLSKVESGVMKLEATKFRPREVVKHVLQTAVVSLQKILTLEGHVADDVPIEVIGDVLRMRQILTNLISNAIKFTHEGRVGINLYVVPKPNFAKAEDIQMMTPNQSTMSVNGVKEEKHLSKPQSGNDGNLLDGCQKHDDHPSQNHAFNDECGSPAKSECSMNGDTEEQPYSAETTVWIRCDVYDTGIGIPEDAIPTLFKRYMQVSADHTRKYGGTGLGLAICKQLVELMGGQLTVSSKEHYGSTFTFILPYKVSIACDHSDDPDELSDLENNDVASDDTIESFFQFQPRTLGSLFSSNGSSRTQKLLTHKIGYTSSHKLGGFSESLYSFPSNDIMSKGTCSVDDASSVVDAPETSELASSSGHSLETKNKSLVRRDKQHQDKARAWSFNGYADSSEVTVSNGEMAGATKSSEPQQTCQGQGKANTTTQCVTSSSTSEVTKSTIKPKILLVEDNKINVMVTQSMMKQLGHSIDVVNNGVEAVRAVQRHTYDLILMDVCMPVMDGLQATKLIRTFEETGNCDAARSSGIEESLPDPDYECYVPFTKRVPIVAMTANALSESAEECFANGMDSFVSKPVTFQKLKECIEQYLVNFS* 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0484 1021 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 467 678 IPR036890 -
Gso6g0484 1021 Coils Coil 92 119 - -
Gso6g0484 1021 MobiDBLite consensus disorder prediction 831 854 - -
Gso6g0484 1021 Gene3D - 867 1018 - -
Gso6g0484 1021 SUPERFAMILY PYP-like sensor domain (PAS domain) 217 334 IPR035965 -
Gso6g0484 1021 Gene3D - 360 437 - -
Gso6g0484 1021 ProSiteProfiles Histidine kinase domain profile. 379 681 IPR005467 -
Gso6g0484 1021 SMART REC_2 873 1013 IPR001789 GO:0000160
Gso6g0484 1021 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 483 679 IPR003594 -
Gso6g0484 1021 Gene3D PAS domain 214 349 - -
Gso6g0484 1021 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Gso6g0484 1021 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Gso6g0484 1021 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Gso6g0484 1021 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1018 - -
Gso6g0484 1021 SMART HisKA_10 372 437 IPR003661 GO:0000155|GO:0007165
Gso6g0484 1021 Pfam Response regulator receiver domain 875 944 IPR001789 GO:0000160
Gso6g0484 1021 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 371 437 IPR036097 GO:0000155|GO:0007165
Gso6g0484 1021 Pfam His Kinase A (phospho-acceptor) domain 374 437 IPR003661 GO:0000155|GO:0007165
Gso6g0484 1021 Gene3D - 438 684 IPR036890 -
Gso6g0484 1021 SUPERFAMILY CheY-like 873 1017 IPR011006 -
Gso6g0484 1021 MobiDBLite consensus disorder prediction 780 795 - -
Gso6g0484 1021 CDD HATPase_EvgS-ArcB-TorS-like 488 678 - -
Gso6g0484 1021 SMART HKATPase_4 483 681 IPR003594 -
Gso6g0484 1021 ProSiteProfiles Response regulatory domain profile. 874 1017 IPR001789 GO:0000160
Gso6g0484 1021 MobiDBLite consensus disorder prediction 564 594 - -
Gso6g0484 1021 Coils Coil 189 209 - -
Gso6g0484 1021 CDD HisKA 371 433 IPR003661 GO:0000155|GO:0007165
Gso6g0484 1021 CDD REC_hyHK_CKI1_RcsC-like 875 1013 - -
Gso6g0484 1021 MobiDBLite consensus disorder prediction 779 806 - -
Gso6g0484 1021 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1018 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0484 Gso-Chr6 4451926 4457894 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0484 1 1017 Histidine Kinase Gene Family AT5G10720 56.876 0.0 1091
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gso6g0484 HATPase_c 2.9e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0484 - - gmx:100819520 1986.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0499 4 4779610 4786037 Gso6g0484 6 4451926 4457894 GST