Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0479 ATGGAGAACAATAATCATCATGCCATGGCTGCAGGTGCTAGTAGTGATTCAAACACTAGTGATCACACCACCCCAATATCTTCTTCTTGTGTTAATGATAACAACAACAATAAGTTATACAAAGGGGTGAGAAAGCGAAAGTGGGGGAAATGGGTTTCTGAAATCAGGCTTCCCAATAGCCGTGAACGAATATGGCTAGGGTCTTATGACTCTCCTGAAAAGGCAGCACGAGCCTTCGATGCTGCCCTTTACTGTCTACGTGGCCGCCATGCCAATTTCAATTTCCCCAACACACCTTGCAACATGGACACTGCTACCAATGCTCCTCCTAACCAATCTCTTACCCCACAAGAGATTCAAGAGGTTGCTGCTAAGTTCGCAAATCAGGTGTCCCCGCTACTACAAAAACCTCAAGAACAACCTCAACCTCAACGTAGTAGTGATGGTGGTGGCGGTGGTGCTAATTCTTCATCGTTTGGATCAAAGTTGTTATGTAAATCAGACAGCATAGCAGAGAGTAGTACTACTAGTACTACTACTAATTGTACCCCCACCACCACTGCCTCGTCATGTTCTGCTACTATGTACGAATGTGATGGAACGGAGCAAGTGGACCGTGGGGACATGATGGATTGGACATTCTTGAACGTCTTTGATTTCTCCAATGAGGTGGTGCTTCCTGCTGTTGGATCCGACTATAATGATCTCTATAATTCTGAGCTACACAAGATGCACTCAGATTCAGGTGAGTTATTGTATTCTACTCCTTTTGAGGGTTACGAACAATTAATTGAAGCTGATCATGATGATGATGATCCTTTTTCTCACCAATCATTCCTTTGGAATTGGAACTTTTGA 858 0.4382 MENNNHHAMAAGASSDSNTSDHTTPISSSCVNDNNNNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDSPEKAARAFDAALYCLRGRHANFNFPNTPCNMDTATNAPPNQSLTPQEIQEVAAKFANQVSPLLQKPQEQPQPQRSSDGGGGGANSSSFGSKLLCKSDSIAESSTTSTTTNCTPTTTASSCSATMYECDGTEQVDRGDMMDWTFLNVFDFSNEVVLPAVGSDYNDLYNSELHKMHSDSGELLYSTPFEGYEQLIEADHDDDDPFSHQSFLWNWNF* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0479 285 MobiDBLite consensus disorder prediction 1 35 - -
Gso6g0479 285 SUPERFAMILY DNA-binding domain 39 96 IPR016177 GO:0003677
Gso6g0479 285 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Gso6g0479 285 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Gso6g0479 285 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Gso6g0479 285 Gene3D AP2/ERF domain 39 97 IPR036955 GO:0003700|GO:0006355
Gso6g0479 285 CDD AP2 38 98 IPR001471 GO:0003700|GO:0006355
Gso6g0479 285 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Gso6g0479 285 Pfam AP2 domain 40 88 IPR001471 GO:0003700|GO:0006355
Gso6g0479 285 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 26 285 - -
Gso6g0479 285 MobiDBLite consensus disorder prediction 134 157 - -
Gso6g0479 285 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 26 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0479 Gso-Chr6 4383462 4384933 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0479 40 139 AP2-EREBP Transcription Factor Family AT1G74930 67.000 1.92e-42 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso6g0479 AP2 6.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0479 - - gmx:100817386 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0492 4 4691795 4693268 Gso6g0479 6 4383462 4384933 GST