Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0476 ATGGGTGGTGATGGTAGAGTTGAAGTTGTGAGTGGCAAGGGGTGTTCGAGGCTGTTTTCATCTTCAATTCCTTCATTCAGAGGTTTGCAACCATTGGAGCCAATGTCTCCTGCTTCGTCTCCTTTGCAAGTGCCATCATCAACTGCTCCTTTTGCTGGTCTTGTCATATGCGTTACTGGTTTATCTAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGACAGTATAGCCCCAATTTGCATCCTCAATGTACCCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAGTTTGAGCATGCGCTGAAGCATGGAGCAAAAAATGGCCTCTTTGTTGTTACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAACTGTGAGGTTGAGTGAATCACATTATAGAGTGAAGAGTTACGGGGATAACAACACACGTTTGGAGGATTTTAGACTGCTTCCTGAGTATAGAAATGCTGAAAATTCTTGTTTTCCTGCAAGAATCCACCAAAGCAACCAAGCTAATAGTGTTGAAGAACTTCAAAGATTCACTGGAAGAGAGTCTAACAGAAATTCGGACTCAACTTTGTCTGGCTGCTCCATCTATGTTGATCCAGGCATTTCATCTGAATTGCGAAACAAGGTTATTGAGACTGCTTCAAGAGAAGGTGCTAGTTTGGTTGAACAATGGTTTGTTGGCTGCAGTGTTAGTCATGTAGTAACTGAAGGGACATCAATCCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCTCTGTGGATTCTCAAAACAGCTAAGGAGAAATATGTGCGAAAGCTTGTTCACATGTCCGTTGATTTGGCAAAGCAAGTTGGCCTAATGCTTGAAGACATCCATAATGACATTTCAGGAAAGGAAGTAATAAAGCAAAAAGTCCTTAACAATCTTCCGGATACTGAAAGTGAAGTCAGCTATGAAGAAAGACAACAAATTGTGAATTCTGCCAAAAATGGAGTCAGAAATCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCAATTCGTCCTATAACACCCAACAACCTTCTAGACTCTATCTGCTGGTCTATATCCGAGCCAACTTCAACTGCTTCCATTTACACAGACTCTTTCAGTGTTGAAGATCCTAGTGAAAATCATACTTCAATATTTTTTGACGCAAAAGGGGATGGCAAGGATTCGGAAGCTTCGTTTTCAAACTCCACTCGTCCTCTGACAGAAAGCGAGAAATCCGAGTTGATATTTAAAAACCATTTCCTTACCATACTATTACCAATCGACCGATTTGCTGAGATGGGTCCTTCTTCAAGAACGTTTTTCAGCCATAATGGTTTTACATGTCTTCAGGTGTTGGATCATATCCGTGCATTTTATCAGGAGAACATGTCAAGGCAAGAAATAGAAGCTGCAATTCATAGTGATTCAAGACACGCTGATAGGCTTAGATCAGTGTACTCAAGTAAGGAAACAGCTGAAAGTGGCTATGTAATGTTCAAAAGGGTTGAATTCTTGGGTAGTCGTACAAGTTTTGAAATGTTGAAGCGTGTAACTGGGGACAACAATTCCAACGTTTATGAGCTATTACTTAGGGCCTAA 1620 0.4154 MGGDGRVEVVSGKGCSRLFSSSIPSFRGLQPLEPMSPASSPLQVPSSTAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGAKNGLFVVTLGWFVDSVRKTVRLSESHYRVKSYGDNNTRLEDFRLLPEYRNAENSCFPARIHQSNQANSVEELQRFTGRESNRNSDSTLSGCSIYVDPGISSELRNKVIETASREGASLVEQWFVGCSVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKYVRKLVHMSVDLAKQVGLMLEDIHNDISGKEVIKQKVLNNLPDTESEVSYEERQQIVNSAKNGVRNRRGRRMQTCQTPIRPITPNNLLDSICWSISEPTSTASIYTDSFSVEDPSENHTSIFFDAKGDGKDSEASFSNSTRPLTESEKSELIFKNHFLTILLPIDRFAEMGPSSRTFFSHNGFTCLQVLDHIRAFYQENMSRQEIEAAIHSDSRHADRLRSVYSSKETAESGYVMFKRVEFLGSRTSFEMLKRVTGDNNSNVYELLLRA* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0476 539 Pfam twin BRCT domain 54 120 IPR001357 -
Gso6g0476 539 ProSiteProfiles BRCT domain profile. 192 270 IPR001357 -
Gso6g0476 539 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 539 - -
Gso6g0476 539 SMART BRCT_7 48 128 IPR001357 -
Gso6g0476 539 SMART BRCT_7 194 270 IPR001357 -
Gso6g0476 539 Pfam Family of unknown function (DUF6699) 363 523 IPR046522 -
Gso6g0476 539 Gene3D BRCT domain 49 140 IPR036420 -
Gso6g0476 539 ProSiteProfiles BRCT domain profile. 46 138 IPR001357 -
Gso6g0476 539 SUPERFAMILY BRCT domain 48 139 IPR036420 -
Gso6g0476 539 CDD BRCT_TopBP1_rpt2_like 50 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0476 Gso-Chr6 4349191 4355169 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0476 43 138 Core DNA Replication Machinery Family AT1G77320 37.500 1.37e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0476 - - gmx:100815253 1075.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0491 4 4656826 4662940 Gso6g0476 6 4349191 4355169 GST