Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gso6g0475 | ATGAAATGGCTTGGGATTGGTGTTGAACTTGAACTATCATCACTTGATGAAGCAATCACTGCTGCATCTCTGAGTACATGTGTGCCAATAGAAAGTGATATTGCAAGCCTTGAAAAGAAAATTGAGTATGAATTTTCAGTCAAGGGACTCTTACTGGAGGCAATCACACATTTGTCTGAGAAAGAACTTGGGATTGGCTGCTGTTATGAGAGGCTTAAATTTCTTGGTGACTCGGTATTGGACCTGCTTATCACATGGCATCTTTATCAGAGTCACACAGATATTGATCCAGGGGTGTTGGCTGACTTACGTTCTGCTTCTGTCAATAATGACAATTTTGCTCAAGTTGCTGTTAGACATAACCTTCACCAGCACCTTCTACATAGCTCAGGATTATTAGTGAGCCAGATATTAGAATATGTGAAGGTCATTTCTGAATCAGATCCCAGATCACTTCCAAGTATTAGAGCTCCCAAGGCACTTGGAGATGTAGTGGAAAGTATTGTCGGGCCTATACTAATTGGTACCAAGCTAAGTCTTGACCAAGTGTGGAACGTTTTCTATCCTCTATTATCTCCCATTGTTACTCCTGATAAACTTGAATTGCCTCCATTTCGTGAATTAAATGAATTATGTGATTCACTTGGGCATTTTGTAAAAGTAAAAGAAAATTGTGAAAAAATGGGATCAGCAATGCATGTTGAGGTTAGTGTACAGCTTCCAAATGCCCTATTGGTTCGTGAAGGAAAGGGGCCAAATAAAAAAACTGCAAAAGGAGAAGCTGCTTTTCATTTGTTGAAGGATCTTGAGAAGCGGGGAATTTTACATGGTAGTCTCATGTCCAAGGGAAAAAGAGACAATCCTGACCATATCTATGATTCATTTCATCTCAAAAGGGATTCTAGTATTTGTTCTTCTCTAATTGAAGAACATTCCTCAGAGCCAGCATCACATAAAAGGCACACATTGGATGAAACTAACTTAACTGCATTTAATTGA | 999 | 0.3904 | MKWLGIGVELELSSLDEAITAASLSTCVPIESDIASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTDIDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESDPRSLPSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLELPPFRELNELCDSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKGEAAFHLLKDLEKRGILHGSLMSKGKRDNPDHIYDSFHLKRDSSICSSLIEEHSSEPASHKRHTLDETNLTAFN* | 333 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gso6g0475 | 332 | Gene3D | Ribonuclease III domain | 21 | 197 | IPR036389 | GO:0004525|GO:0006396 | |
| Gso6g0475 | 332 | Pfam | Dicer dimerisation domain | 208 | 285 | - | - | |
| Gso6g0475 | 332 | SUPERFAMILY | dsRNA-binding domain-like | 204 | 277 | - | - | |
| Gso6g0475 | 332 | MobiDBLite | consensus disorder prediction | 309 | 332 | - | - | |
| Gso6g0475 | 332 | PANTHER | DICER-RELATED | 1 | 302 | - | - | |
| Gso6g0475 | 332 | ProSiteProfiles | Double stranded RNA-binding domain (dsRBD) profile. | 248 | 271 | IPR014720 | - | |
| Gso6g0475 | 332 | CDD | RIBOc | 50 | 198 | IPR000999 | GO:0004525|GO:0006396 | |
| Gso6g0475 | 332 | Pfam | Ribonuclease III domain | 70 | 174 | IPR000999 | GO:0004525|GO:0006396 | |
| Gso6g0475 | 332 | PANTHER | ENDORIBONUCLEASE DICER HOMOLOG 3 | 1 | 302 | - | - | |
| Gso6g0475 | 332 | SUPERFAMILY | RNase III domain-like | 32 | 197 | IPR036389 | GO:0004525|GO:0006396 | |
| Gso6g0475 | 332 | SMART | riboneu5 | 49 | 200 | IPR000999 | GO:0004525|GO:0006396 | |
| Gso6g0475 | 332 | Gene3D | - | 203 | 272 | - | - | |
| Gso6g0475 | 332 | ProSiteProfiles | Ribonuclease III family domain profile. | 34 | 177 | IPR000999 | GO:0004525|GO:0006396 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gso6g0475 | Gso-Chr6 | 4341344 | 4347813 | Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gso6g0475 | K11592 | - | gmx:100814732 | 644.425 |
Event-related genes