Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0469 ATGAGTTCTAAAAAGATTACATGGAAGTCTATAGTGTTGATCTTAAGTTGTAACAAGACTTCAGAAAAACAGGTTTTGAAACAAGGTTCTTTCCAAAGGTTATGCCTCTCGGATATAAGCATTCCCAGCTCCCCTCAGGCCATTGAAGATCTTTCCATTTCCATTTCCCTGGTTGGCCCAAAACTTCACACATTCACACTAGATGAGCTAAGGGAAGCAACACATAATTTCTCATGGAGTAATTTTCTGGGTGAAGGCGGGTTCGGACCCGTGTACAAGGGTTTTGTTGATGATAAACTTAGACCTGGTTTGAAGGCTCAGCCTCTGGCTGTGAAACAACTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGGCAGAGATTATATTTCTTGGACAGCTGAGGCATCCACATCTTGTTAAGTTAATAGGGTACTGTTGTGAGGATGAGCACAGGCTTCTGGTGTATGAATACATGGCAAGAGGCAGCTTGGAGAATCAACTGCACAGAAGATACTCTGCTGCCTTACCATGGTCAACCAGGATGAAGATTGCATTGGGTGCAGCCAAGGGTCTCGCCTTCCTACATGAAGCAGATAAACCTGTGATATACAGAGATTTCAAAACTTCAAATATCTTACTAGACTCGGATTACACAGCTAAACTATCAGACCTTGGGCTAGCAAAGGATGGTCCTGAAGGGGAAGCCACACATGTAACAACAACATGCATAATGGGAACCCGAGGCTATGCTGCTCCTGAGTACATCATGTCAGGTCACCTTTCCACCAAGAGTGATGTGTATAGCTATGGAGTGGTTTTGTTGGAATTGCTTACGGGAAGAAGGGTAGTGGATAAATGCGGGTCGAATCGAGAACAAAGCCTGGTGGAATGGGCAAGGCCTCTTTTGAGGGATCAAAGAAAGCTGCACCATATAATAGACCCAAGATTGGAAGGGCAGTTTCCTATGAAAGGAGCTTTGAAGGTTGCTGCATTGACTTACAAATGCTTGAGCCGCCACCCCAATCCAAGGCCTTCTATGAGTGATGTTGTAAAAATACTAGAATCACTTCAGGACTTTGATGATGTGATCATAGGACCATTTGTTTATGTGGCCGGGTGA 1125 0.4462 MSSKKITWKSIVLILSCNKTSEKQVLKQGSFQRLCLSDISIPSSPQAIEDLSISISLVGPKLHTFTLDELREATHNFSWSNFLGEGGFGPVYKGFVDDKLRPGLKAQPLAVKQLDLDGLQGHREWLAEIIFLGQLRHPHLVKLIGYCCEDEHRLLVYEYMARGSLENQLHRRYSAALPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKTSNILLDSDYTAKLSDLGLAKDGPEGEATHVTTTCIMGTRGYAAPEYIMSGHLSTKSDVYSYGVVLLELLTGRRVVDKCGSNREQSLVEWARPLLRDQRKLHHIIDPRLEGQFPMKGALKVAALTYKCLSRHPNPRPSMSDVVKILESLQDFDDVIIGPFVYVAG* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0469 374 PANTHER OS01G0588500 PROTEIN-RELATED 17 373 - -
Gso6g0469 374 PANTHER KINASE 1B 17 373 - -
Gso6g0469 374 SUPERFAMILY Protein kinase-like (PK-like) 57 357 IPR011009 -
Gso6g0469 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Gso6g0469 374 Pfam Protein tyrosine and serine/threonine kinase 80 355 IPR001245 GO:0004672|GO:0006468
Gso6g0469 374 Gene3D Transferase(Phosphotransferase) domain 1 160 365 - -
Gso6g0469 374 Gene3D Phosphorylase Kinase; domain 1 43 159 - -
Gso6g0469 374 ProSiteProfiles Protein kinase domain profile. 77 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0469 374 CDD STKc_IRAK 83 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0469 Gso-Chr6 4310484 4312944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0469 42 355 Glycoside Hydrolase AT3G07070 48.615 5.11e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gso6g0469 PK_Tyr_Ser-Thr 1.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0469 - - gmx:100813130 756.133
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0486 4 4605777 4608967 Gso6g0469 6 4310484 4312944 GST