Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0462 ATGGCGTTTCGGTTTGGACTACTCCTTCTGGTTTCTCTTCTTTGTTTGGATTCAATTAGTTCCGTGAATTCACACGTCGGAGAAACGTTGTTGGAGATAAAGAAGTGGTTCAGGGATGTGGATAACGTCCTGTATGACTGGACAGACTCAACTTCTTCTGATTATTGTGTTTGGAGAGGTGTTACGTGTGATAATGTCACTTTCAACGTGGTTGCACTCAATCTTTCGGGGTTGAATCTTGAGGGCGAAATTTCACCTGCAATAGGGAGACTTAACAGCTTGATCTCTATTGATTTCAAGGAAAACCGTTTATCTGGCCAGATACCTGACGAACTTGGTGATTGTTCCTCTTTGAAAAGCATAGACTTGTCATTTAATGAGATTCGGGGAGATATACCGTTTTCGGTTTCAAAGATGAAACAGCTGGAAAATCTAATTTTGAAAAATAATCAGCTAATTGGACCAATCCCTTCAACACTCTCTCAGGTTCCTAACTTGAAGATTCTAGACCTGGCACAGAATAATCTTAGCGGGGAGATACCAAGACTTATATATTGGAATGAAGTTTTGCAATATCTTGGCTTGCGAGGTAACAATTTGGTGGGTTCACTTTCTCCAGACATGTGCCAGTTAACTGGATTGTGGTATTTTGACGTGAGAAACAATAGCTTGACGGGCAGTATTCCTGAAAACATAGGCAATTGTACTACTTTAGGGGTCTTGGATTTATCCTACAACAAGCTAACCGGAGAGATACCATTCAATATTGGGTATCTGCAAGTAGCAACTCTGTCATTGCAAGGCAATAAACTCTCAGGGCATATTCCATCAGTGATTGGTCTGATGCAAGCGCTTACTGTCTTAGATTTGAGTTGTAACATGTTAAGTGGACCAATCCCTCCTATCTTGGGAAATTTGACCTACACAGAAAAATTGTATTTACATGGAAACAAGCTGACTGGCCTCATCCCCCCAGAACTTGGAAATATGACAAACCTTCACTATTTGGAATTGAATGACAACCATTTAAGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCTCAATGTGCATGGGAATAAGCTGAGTGGAACAGTCCCCTCAGCTTTTCATAGCTTGGAGAGTATGACCTATCTGAATCTTTCTTCAAACAAGCTTCAAGGCTCCATTCCAGTTGAACTTTCACGGATTGGTAATTTGGATACACTGGATATATCAAATAATAATATAATTGGTTCTATTCCTTCTTCCATTGGTGACTTGGAACATCTTCTGAAGTTGAATCTGAGCAGAAATCATTTAACAGGGTTTATTCCAGCAGAATTTGGAAATCTAAGAAGTGTCATGGATATTGATCTTTCAAATAATCAACTCTCTGGCTTGATTCCTGAAGAACTTAGTCAGCTTCAGAACATTATATCCTTGAGACTAGAAAAGAACAAATTATCTGGGGATGTGTCTTCGCTTGCAAATTGCTTTAGTCTTTCTCTACTTAATGTCTCTTATAACAACCTAGTTGGTGTTATTCCCACAAGCAAGAATTTTTCCAGGTTTTCCCCTGACAGTTTTATTGGAAATCCTGGTCTTTGTGGTGATTGGCTGGATTTGTCTTGTCATGGGTCAAACTCTACAGAGCGAGTTACCTTGTCCAAGGCAGCTATCCTGGGAATTGCAATAGGCGCCCTTGTGATTCTTTTTATGATATTGCTAGCTGCTTGCCGACCACACAATCCAACTTCTTTCGCTGATGGATCTTTTGACAAACCAGTCAATTACTCACCTCCGAAGCTAGTGATTCTTCACATTAATATGACACTTCATGTGTATGATGATATCATGAGGATGACTGAAAACCTAAGTGAGAAGTATATAATCGGGTATGGTGCATCGAGTACAGTTTATAAATGTGTCCTTAAAAATTGCAAGCCGGTGGCTATCAAGAAGCTCTATTCCCACTACCCACAATACTTGAAAGAGTTTGAGACTGAGCTTGAGACAGTTGGTAGCGTTAAGCACAGAAATCTGGTCAGTCTCCAAGGCTACTCTTTGTCAACGTACGGAAATCTTCTCTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTGCATGGACCTACCAAGAAGAAAAAGCTTGATTGGGATCTTCGTCTAAAAATAGCACTAGGATCAGCCCAAGGGCTTGCTTATCTACACCATGATTGCAGTCCACTCATCATTCACAGGGACGTGAAATCATCTAATATTTTACTAGACAAAGACTTTGAGCCCCATCTCGCTGATTTCGGCATTGCAAAAAGTCTATGCCCATCTAAGACCCACACTTCAACTTACATAATGGGCACAATTGGCTACATAGACCCTGAGTATGCTAGAACTTCCCGCCTCACTGAGAAGTCCGATGTGTATAGCTATGGTATCGTATTGCTTGAGCTTCTAACTGGGAGGAAAGCTGTTGACAACGAATCAAACCTCCATCATCTGATTTTGTCCAAGACAGCTAATGATGGCGTAATGGAAACCGTTGATCCAGATATTACTACCACATGCAGGGACATGGGAGCAGTAAAAAAGGTTTTTCAGCTTGCTCTTTTATGCACAAAGAAGCAACCAGTCGATAGGCCTACAATGCATGAAGTGACTCGCGTGCTGGGAAGCCTTGTGCCATCCATAACCCTACCAAAACAAACTGACTCAACACAAGTGCTGCTACCTGATTCTCAGTCATCTGCTAAAATGCAATGCTACAAAGATGAATATGCAAATCTCAAAACTCCTCACTTGGTTAACTGTCCTTCCATGAGCACCTCTGATGCACAACTCTTCCTCAAATTTGGGGAAGTAATATCACAAAATAGTCACTGA 2955 0.4095 MAFRFGLLLLVSLLCLDSISSVNSHVGETLLEIKKWFRDVDNVLYDWTDSTSSDYCVWRGVTCDNVTFNVVALNLSGLNLEGEISPAIGRLNSLISIDFKENRLSGQIPDELGDCSSLKSIDLSFNEIRGDIPFSVSKMKQLENLILKNNQLIGPIPSTLSQVPNLKILDLAQNNLSGEIPRLIYWNEVLQYLGLRGNNLVGSLSPDMCQLTGLWYFDVRNNSLTGSIPENIGNCTTLGVLDLSYNKLTGEIPFNIGYLQVATLSLQGNKLSGHIPSVIGLMQALTVLDLSCNMLSGPIPPILGNLTYTEKLYLHGNKLTGLIPPELGNMTNLHYLELNDNHLSGHIPPELGKLTDLFDLNVANNNLEGPVPDNLSLCKNLNSLNVHGNKLSGTVPSAFHSLESMTYLNLSSNKLQGSIPVELSRIGNLDTLDISNNNIIGSIPSSIGDLEHLLKLNLSRNHLTGFIPAEFGNLRSVMDIDLSNNQLSGLIPEELSQLQNIISLRLEKNKLSGDVSSLANCFSLSLLNVSYNNLVGVIPTSKNFSRFSPDSFIGNPGLCGDWLDLSCHGSNSTERVTLSKAAILGIAIGALVILFMILLAACRPHNPTSFADGSFDKPVNYSPPKLVILHINMTLHVYDDIMRMTENLSEKYIIGYGASSTVYKCVLKNCKPVAIKKLYSHYPQYLKEFETELETVGSVKHRNLVSLQGYSLSTYGNLLFYDYMENGSLWDLLHGPTKKKKLDWDLRLKIALGSAQGLAYLHHDCSPLIIHRDVKSSNILLDKDFEPHLADFGIAKSLCPSKTHTSTYIMGTIGYIDPEYARTSRLTEKSDVYSYGIVLLELLTGRKAVDNESNLHHLILSKTANDGVMETVDPDITTTCRDMGAVKKVFQLALLCTKKQPVDRPTMHEVTRVLGSLVPSITLPKQTDSTQVLLPDSQSSAKMQCYKDEYANLKTPHLVNCPSMSTSDAQLFLKFGEVISQNSH* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0462 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ERECTA 5 971 - -
Gso6g0462 984 SMART LRR_typ_2 330 354 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 402 426 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 211 235 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 450 473 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 91 115 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 474 497 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 163 187 IPR003591 -
Gso6g0462 984 SMART LRR_typ_2 282 306 IPR003591 -
Gso6g0462 984 Pfam Protein kinase domain 651 911 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0462 984 ProSitePatterns Serine/Threonine protein kinases active-site signature. 769 781 IPR008271 GO:0004672|GO:0006468
Gso6g0462 984 Gene3D Transferase(Phosphotransferase) domain 1 724 932 - -
Gso6g0462 984 ProSiteProfiles Protein kinase domain profile. 648 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0462 984 SMART serkin_6 648 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso6g0462 984 SUPERFAMILY RNI-like 96 494 - -
Gso6g0462 984 Gene3D Ribonuclease Inhibitor 187 259 IPR032675 -
Gso6g0462 984 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 971 - -
Gso6g0462 984 Pfam Leucine rich repeat 452 511 IPR001611 GO:0005515
Gso6g0462 984 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Gso6g0462 984 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Gso6g0462 984 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Gso6g0462 984 ProSiteProfiles Leucine-rich repeat profile. 165 187 IPR001611 GO:0005515
Gso6g0462 984 Gene3D Ribonuclease Inhibitor 260 346 IPR032675 -
Gso6g0462 984 Gene3D Ribonuclease Inhibitor 443 569 IPR032675 -
Gso6g0462 984 Gene3D Phosphorylase Kinase; domain 1 622 723 - -
Gso6g0462 984 Gene3D Ribonuclease Inhibitor 26 186 IPR032675 -
Gso6g0462 984 Gene3D Ribonuclease Inhibitor 347 442 IPR032675 -
Gso6g0462 984 SUPERFAMILY Protein kinase-like (PK-like) 625 914 IPR011009 -
Gso6g0462 984 ProSitePatterns Protein kinases ATP-binding region signature. 654 677 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0462 Gso-Chr6 4239169 4247043 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0462 93 983 Receptor kinase-like Gene Family AT5G07180 63.565 0.0 1123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Gso6g0462 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0462 K20718 - gmx:100795363 1929.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0481 4 4537053 4547994 Gso6g0462 6 4239169 4247043 GST