Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0461 ATGGCTACTCATCTTTTCAGACTTCCTCTCTTCTCGCAACCCAAGCTCTCCTTCAATCACACGCCTAATCATGCACTCCACTTCATTTCTCCTCTGCCGGCAAAACGACATCGCACCCGCAACCGCCACCGTCGTCGAATTCTCCGGCCACCGTTCTCTGTTTCGAACTCCTTCGGCACCGAGATTGGCTCGCCGGAATTTTCTCTCCTTCAAAGCAGGAGAGAGGCCAAAGACTCGCCGGTTCTGCTCGACGTCACCGGAATGATGTGCGGCGCGTGCGTCTCCCGAGTCAAAAACATCCTCTCCGCTGACGACCGAGTTGACTCGGTCGTGGTCAACATGTTGACCGAGACCGCCGCCGTCAAGCTGCGGCGGATCGAGGAGGAACCGGCGAGCGTCGCGGAGAGCCTCGCTCTGAGACTGAGCGATTGCGGATTTCCGACGAAGAGGAGGGCGTCGAGCTCGGGAGTGACGGAAAACGTGAGGAAGTGGAAGGAGTTGGTGAAGAAGAAGGAGGAATTGGTCGTTAAGAGTCGAAGCCGCGTCGCGTTCGCTTGGACATTGGTCGCATTGTGCTGCGGATCGCACGCTTCGCATATTTTCCACTCCTTGGGGATTCACATTGCTCACGGACCGCTTATGGAGATTCTTCATAGTTCATACTTGAAAGGTGGTTTAGCTTTGGGGTCTCTATTGGGACCAGGACGAGAGTTACTCTTTGATGGCCTAAACGCATTTAAGAAGGGGTCGCCTAATATGAACTCTCTCGTGGGATTTGGTTCTGTAGCTGCTTTCATCATTAGTTCGATCTCGCTACTTAACCCCGGCCTGGCATGGGATGCATCATTCTTTGATGAACCGGTCATGCTTCTTGGTTTCGTGCTTCTGGGACGTTCTCTGGAGGAAAAGGCAAGGATTCAGGCATCTAGCGATATGAATGAACTGCTTTCACTGATATCCACTCAGTCAAGACTTGTGATTACTTCAACAGAAGGTTCACCTTCTACTGACACTGTGCTTTGCTCTGATGCAATTTGTGTTGAAGTCCCAACTGATGATATTCGAGTAGGGGATTCTGTGTTGGTGTTGCCTGGAGAAACTATTCCTATAGATGGAACGGTCATTTCAGGAAGAAGTGTTATAGATGAATCCATGCTTACAGGGGAATCACTTCCTGTATTTAAGGAGAAAGGGCTCACAGTTTCAGCAGGAACTATAAATTGGGATGGTCCTTTAAGGATTGAAGCTTCTTCAACTGGCTCCAACACTATGATATCGAAGATTGTACGCATGGTTGAGGATGCTCAATCACGTGAAGCACCTGTACAAAGGCTTGCAGATTCAATAGCAGGGCCATTTGTATACAGTGTAATGACTTTGTCAGCAGCAACATTTGCATTTTGGTATTTTGTAGGATCACACATATTTCCTGATGTTTTGCTCAACGATATTGCTGGCCCAGAAGGAGATCCTTTGTTGTTGAGTTTAAAACTATCCGTAGATGTTTTGGTTGTTTCTTGTCCATGTGCACTGGGTCTTGCTACGCCCACAGCAATCTTGGTTGGCACCTCACTTGGGGCAAGAAAAGGACTTCTTATTAGGGGAGGGGATGTGCTGGAACGCTTGGCTGGAATAAATTATATTGCTCTAGACAAGACAGGAACCCTTACCAAAGGAAAACCAGTTGTGTCGGCCATAAGCTCTATCCTTTATGGAGAATCTGAAATTCTTCGGCTTGCTGCTGCAGTGGAGAAAACAGCATCTCACCCAATAGCAAAGGCTATTGTCAATAAAGCTGAGTCATTAGAGTTGGTACTTCCCGTTACAAAGGGACAGTTGGTTGAGCCAGGTTTTGGAACTTTAGCAGAAGTTGATGGGCATCTGATTGCAGTTGGGTCTTTAGAATGGGTTCATGAACGCTTCCAGACAAGAGCGAACCCATCTGATTTGACAAATCTGGAGAATAGTTTGATGAATCATTCATTGAATACAACATCTTCAAAGTATTCAAAAACTGTTGTCTATGTTGGACGTGAAGGAGAAGGCATCATTGGTGCGATTGCCATATCTGACACTGTGCGTGAAGATGCTGAATCTACTATAACAAGGCTCAAGCAGAAGGGGATTAAAACAGTCCTCTTGTCAGGAGACAGGGAAGAGGCAGTTGCAACTGTAGCAGATACAGTTGGAATTGAAAATGATTTTGTCAAAGCATCTTTGTCTCCACAACAGAAATCTGGATTTATTTCCTCTCTGAAAGCTGCTGGACATCATGTTGCAATGGTAGGTGATGGGATAAATGATGCACCCTCTTTGGCTGTGGCTGATGTTGGGATTGCTCTGCAGAATGAAGCTCAAGAGAATGCTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTGCTGGTGTTTTACTTCCCCATTTTGACTTTGCCATGACACCGTCACTTTCAGGAGGACTGATGGCTCTGAGCTCCATCTTCGTGGTTGGCAACTCACTGCTTCTACAGCTTCATGGGTCTCAGATCTCTAGAAAGGTTGGGTCAACTATAGAAATCATATCTTCCCATTCGAACACAGATATGCTTAATTTAAAATAA 2712 0.4668 MATHLFRLPLFSQPKLSFNHTPNHALHFISPLPAKRHRTRNRHRRRILRPPFSVSNSFGTEIGSPEFSLLQSRREAKDSPVLLDVTGMMCGACVSRVKNILSADDRVDSVVVNMLTETAAVKLRRIEEEPASVAESLALRLSDCGFPTKRRASSSGVTENVRKWKELVKKKEELVVKSRSRVAFAWTLVALCCGSHASHIFHSLGIHIAHGPLMEILHSSYLKGGLALGSLLGPGRELLFDGLNAFKKGSPNMNSLVGFGSVAAFIISSISLLNPGLAWDASFFDEPVMLLGFVLLGRSLEEKARIQASSDMNELLSLISTQSRLVITSTEGSPSTDTVLCSDAICVEVPTDDIRVGDSVLVLPGETIPIDGTVISGRSVIDESMLTGESLPVFKEKGLTVSAGTINWDGPLRIEASSTGSNTMISKIVRMVEDAQSREAPVQRLADSIAGPFVYSVMTLSAATFAFWYFVGSHIFPDVLLNDIAGPEGDPLLLSLKLSVDVLVVSCPCALGLATPTAILVGTSLGARKGLLIRGGDVLERLAGINYIALDKTGTLTKGKPVVSAISSILYGESEILRLAAAVEKTASHPIAKAIVNKAESLELVLPVTKGQLVEPGFGTLAEVDGHLIAVGSLEWVHERFQTRANPSDLTNLENSLMNHSLNTTSSKYSKTVVYVGREGEGIIGAIAISDTVREDAESTITRLKQKGIKTVLLSGDREEAVATVADTVGIENDFVKASLSPQQKSGFISSLKAAGHHVAMVGDGINDAPSLAVADVGIALQNEAQENAASDAASIILLGNKISQVVDALDLAQATMGKVYQNLCWAVAYNVVAIPIAAGVLLPHFDFAMTPSLSGGLMALSSIFVVGNSLLLQLHGSQISRKVGSTIEIISSHSNTDMLNLK* 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0461 903 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 551 646 IPR023299 GO:0000166
Gso6g0461 903 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 334 851 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gso6g0461 903 Pfam haloacid dehalogenase-like hydrolase 545 776 - -
Gso6g0461 903 PRINTS P-type cation-transporting ATPase superfamily signature 382 396 - -
Gso6g0461 903 PRINTS P-type cation-transporting ATPase superfamily signature 549 563 - -
Gso6g0461 903 PRINTS P-type cation-transporting ATPase superfamily signature 685 696 - -
Gso6g0461 903 PRINTS P-type cation-transporting ATPase superfamily signature 707 717 - -
Gso6g0461 903 PRINTS P-type cation-transporting ATPase superfamily signature 762 781 - -
Gso6g0461 903 Gene3D - 72 152 - -
Gso6g0461 903 PANTHER ATP7, ISOFORM B 79 875 - -
Gso6g0461 903 Gene3D - 305 436 - -
Gso6g0461 903 SUPERFAMILY HAD-like 547 870 IPR036412 -
Gso6g0461 903 SFLD C1.7: P-type atpase like 532 815 - -
Gso6g0461 903 ProSiteProfiles Heavy-metal-associated domain profile. 80 150 IPR006121 GO:0046872
Gso6g0461 903 Pfam E1-E2 ATPase 335 529 - -
Gso6g0461 903 CDD P-type_ATPase_HM 181 872 - -
Gso6g0461 903 CDD HMA 83 147 IPR006121 GO:0046872
Gso6g0461 903 SUPERFAMILY Calcium ATPase, transmembrane domain M 283 543 IPR023298 -
Gso6g0461 903 Gene3D - 560 693 IPR023299 GO:0000166
Gso6g0461 903 Pfam Heavy-metal-associated domain 83 145 IPR006121 GO:0046872
Gso6g0461 903 SUPERFAMILY Calcium ATPase, transduction domain A 342 432 IPR008250 -
Gso6g0461 903 SUPERFAMILY HMA, heavy metal-associated domain 81 124 IPR036163 GO:0046872
Gso6g0461 903 SFLD p-type atpase 532 815 IPR044492 -
Gso6g0461 903 ProSitePatterns E1-E2 ATPases phosphorylation site. 551 557 IPR018303 -
Gso6g0461 903 Coils Coil 902 903 - -
Gso6g0461 903 Gene3D - 540 813 IPR023214 -
Gso6g0461 903 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 253 873 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0461 Gso-Chr6 4224129 4232874 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0461 244 874 Primary Pumps ATPases AT1G63440 37.422 2.13e-115 375
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0461 K17686 - gmx:100127402 1676.76