Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0452 ATGGATGTTATTAATAAGCAGCAAGGTGGTCTAAAATGCGGTGAAGTAACCATGGCTGAGAAGAAGAGAGAAGTGATGGTGGCGATTCCAAACGAGCAGCAGCATAGCAGGGTGAATTCGCCACACAGAATATTAAACGACAACGAGGTTGCCGGAGCAAAGTCGCCACCTTTAAACTGTGCTTCCCCTGAGATAAGGTTCATGCCAAGCCCAAACAAGCCCCCAAAAGTTTTCACTTCCAACGCCAACCTCACTCGGCGAAAATCACTCACAAGGTCAGTGTATTCCAAACCCAAATCAAGGTTTGGTGAACAACCTTACCCCATTGATGGGACCCTTTTGGAAGATAATGCAAACTCAACTTTGCAAGAAAACTTGACTGTTGGTTCGCCATATAAAGCATCACCTAATAACAACAACAAAGCTGGGACTGTTAATAGAACATTCTCCATCCTGTCTGTGATCACTCCCAAGACACCGCTGATGGCGTCTCCCGGGCCGGCCGGGGAGGATTTCGATGAAATCATTTACAAGAAAGTTGAATTGAGTAAAAACAAGCGTAGTAGGAGACTGACTGCTAAGATGTTGTTTGAATGGTTTGTGTTTGTGTGCATTGCAAGTAGCTTGGTGGCTAGTTTAGCTGTTGGAAAACTTAAAAGGACCGAGATTTGGGGTTTGGGGTTTTGGAGGTTGTGTGTGCTTGTGATGGTGACCTTTTGCGGCATGTTGGTTACAAGATGGTTTATGCACATTGTTGTTTTCTTGATTGAGACCAACTTTTTGCTGAGGAAAAAGGTGCTGTATTTTGTCTATGGACTGAAGAAGTGTGTCCAGTTCTTCATTTGGCTTGGTTTGGTTCTTCTCACATGGGTGCTGTTGATTAACCGCGGGGTCCACCGAACTGAACTGGCCTCAAAGATTTTGAATGGGGTAACATGGACTCTTGTTTCCCTCCTCATTGGAGCATTCCTGTGGTTCGTGAAGACATTGTTGTTAAAGATCTTGGCATCGAATTTCCATGTCAAGTCTTTCTTTGATCGAATTCAAGAATCGCTCTTCCATCAGTACATTCTGCAGACTCTCTCTGGACCTCCACTTGTAGAAGAGGCTGAGAAGGTTGGGGCATCGTACAGTGTTGGTCATTTTAGTTTTAGGAGTACAGATGGTAAAGGTGGCACAAAGAAAGAGACTATTGATATCGCAAAGCTTCACCAGATGAAACAAGAGAAAGTTTCTGCGTGGACTATGAAGGTTTTGGTAGATGCAATGACAACTTCAGGGCTGTCCACAATCTCTAGTGCACTAGATGAAAGTTTCGATGAAGGAGAAAATGAACAAACTGATAAAGAGATTACTAATGAGATGGAAGCAACTGCTGCTGCCTATTACATTTTCAGGAATGTGGCTGCCCCTGGTTGCACGTACATTGATGAGGATGAACTTCGGAGGTTCATGATTAAGGAAGAAGTGCGAATGGTATATCCCCTATTGGCTGAAGCAGAAACGGGGCAAATTACTAGAAAGTCCTTAACAGACTGGTTGTTGAAGGTTTATCAAGAACGCAGAGCATTAGCACATGCCTTAAGTGACACTAAAACAGCTGTAAAACAACTAAACAAACTCGTGACCGTACTCCTAGTAGTGGTGAACATAATCGTGTGGCTTCTACTGATGGAGATTGCAACAACAAAAGTACTTGTATTCCTCTCATCACAGCTAGTACTTGCAGCTTTCATGTTTGGAAACACATGCAAGAACATATTTGAAGCTATCATCTTTGTGTTTGTAATGCATCCATTTGATGTTGGTGATCGGTGTGTTATTGATGGTGTTGAGCTATTGGTTGAAGAAATGAATATATTGACAACAGTCTTCTTGAAGCTTAATAATGAAAAGGTGTACTATCCAAACTCTGTCCTGGCCACAAAACCAATTAGCAATTATTACAGAAGCCCAGATATGGGTGACCGCGTAGATTTCTCCATTGATTTTATGACACCAGCAGAGAAGATTGGGGCACTGAAAGAAAAAATAAAAAGGTACGTGGAGAGAAATCCACAATACTGGCACTCCAATCATGGCTTAGTAGTGAAGGAGATTGAAGATGTAAACAAGATTAAGATGGCTCTCAATGTTACCCACACAATGAACTTTCAAGAGTTTGGGGAGAAAACCAAGCGAAGAACTGAATTGGTGATGGAAGTAAAGAAAATGTTTGAAGAGCTCAATATCAGATACAACCTTCTTCCTCAAGGCATTCATCTCAGACATATTGAACCAAACTCGAGTGTGCTCAATACATGA 2304 0.4223 MDVINKQQGGLKCGEVTMAEKKREVMVAIPNEQQHSRVNSPHRILNDNEVAGAKSPPLNCASPEIRFMPSPNKPPKVFTSNANLTRRKSLTRSVYSKPKSRFGEQPYPIDGTLLEDNANSTLQENLTVGSPYKASPNNNNKAGTVNRTFSILSVITPKTPLMASPGPAGEDFDEIIYKKVELSKNKRSRRLTAKMLFEWFVFVCIASSLVASLAVGKLKRTEIWGLGFWRLCVLVMVTFCGMLVTRWFMHIVVFLIETNFLLRKKVLYFVYGLKKCVQFFIWLGLVLLTWVLLINRGVHRTELASKILNGVTWTLVSLLIGAFLWFVKTLLLKILASNFHVKSFFDRIQESLFHQYILQTLSGPPLVEEAEKVGASYSVGHFSFRSTDGKGGTKKETIDIAKLHQMKQEKVSAWTMKVLVDAMTTSGLSTISSALDESFDEGENEQTDKEITNEMEATAAAYYIFRNVAAPGCTYIDEDELRRFMIKEEVRMVYPLLAEAETGQITRKSLTDWLLKVYQERRALAHALSDTKTAVKQLNKLVTVLLVVVNIIVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCVIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLATKPISNYYRSPDMGDRVDFSIDFMTPAEKIGALKEKIKRYVERNPQYWHSNHGLVVKEIEDVNKIKMALNVTHTMNFQEFGEKTKRRTELVMEVKKMFEELNIRYNLLPQGIHLRHIEPNSSVLNT* 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0452 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 21 755 IPR016688 -
Gso6g0452 767 SUPERFAMILY Sm-like ribonucleoproteins 589 648 IPR010920 -
Gso6g0452 767 PIRSF Memb_At2g17000 17 767 IPR016688 -
Gso6g0452 767 Pfam Mechanosensitive ion channel 539 745 IPR006685 GO:0016020|GO:0055085
Gso6g0452 767 Gene3D - 599 648 IPR023408 -
Gso6g0452 767 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 21 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0452 Gso-Chr6 4175602 4179842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0452 18 755 Mechanosensitive Ion Channel Family AT5G12080 57.580 0.0 833
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0452 K22048 - gmx:100777617 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0472 4 4445536 4449488 Gso6g0452 6 4175602 4179842 GST