Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0446 ATGGGTGATGACGACGACAATAACAACAACTCCTCCCGGTTTGTTCCATACACGTGTCGAGATCCATTTGTCAGTCCACTTCTCGATAACTTTTTTATCGAACCGGACCCTGCACTTGTCTATTTATTACCCGAACCGAACCTACAAAATGATGAACAGCAGTCCCTGCAGGGTGGTCATGTTTCCTCCACGGGTTCAACGATCCAAGATCAATCCCAGCAGCATTTTTGCAATGACAATTTTACCATTGGTGGAGGAGGAGTTCCTAACTACCAAGTAGCGGGGTCTTCCAAGAACAAGCGTACATATCCCTTCACTGATGTGGATATTGAACATCAATCCTTCAGGTATGACCTTAAAGCGGGTCCATCCAATCTGAATCAGTCTGAAAGTGGGATTATGGGTTCTCGTAATTGGCCTCCTATACCAAGGCCATTCTTTTGCACTTGCTGCCAAGTTCTAAGACAGACAATTCACACCAATGGGATTATTCTGAGTTTCACCAACGGAACCCCTGCAGAAGTTAAGGGTTTCCTTGAAGATTACATTGCGCAGAAGGATAAATTAGGGTACATTATTGTGGAAGAAGCTTTTTCTGCGTTTTATGAAGCCCTCTGCACCAAATTAGATTGGATTGGAAAACGTACTAATAACGAAGACGATGATTTGATTCCACCAAATTTGGAGGAAGAAGAACCTGAGGCTGAGCCTGAGAAAAGAAGGCATAAACGAAGTCGCAAAGATCAGTCCGATAGGATAAATAATATGACATTGAATGATTTGAGTGGCGTGTTCCACATAACTATGAAGGCTGCAAAGGATGTATTAGAAATGTCTGTTACTGTAATTAAGGCAATTTGCCGCAAGTATCGTTTATATAAATGGCCCCAAAGACAGTTGCAACCACTTGCGAGGAGGTTGAAAGTGCTCAAAAGAGCATTAGAATCTTCACAAGATCCAGTGATAATACAGACAACTAACATGGAGGTTCGAAGAATTAAACAAGAAATGACTCAGTTGTGTGGTGGAGTTACCCCAACGGGTATAGAAATTCCTGAAGTTGAAGAGAATAGTGTTTAA 1080 0.4204 MGDDDDNNNNSSRFVPYTCRDPFVSPLLDNFFIEPDPALVYLLPEPNLQNDEQQSLQGGHVSSTGSTIQDQSQQHFCNDNFTIGGGGVPNYQVAGSSKNKRTYPFTDVDIEHQSFRYDLKAGPSNLNQSESGIMGSRNWPPIPRPFFCTCCQVLRQTIHTNGIILSFTNGTPAEVKGFLEDYIAQKDKLGYIIVEEAFSAFYEALCTKLDWIGKRTNNEDDDLIPPNLEEEEPEAEPEKRRHKRSRKDQSDRINNMTLNDLSGVFHITMKAAKDVLEMSVTVIKAICRKYRLYKWPQRQLQPLARRLKVLKRALESSQDPVIIQTTNMEVRRIKQEMTQLCGGVTPTGIEIPEVEENSV* 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0446 359 ProSiteProfiles RWP-RK domain profile. 237 323 IPR003035 -
Gso6g0446 359 PANTHER PROTEIN RKD4 39 343 IPR044607 GO:0003700
Gso6g0446 359 Pfam RWP-RK domain 255 301 IPR003035 -
Gso6g0446 359 MobiDBLite consensus disorder prediction 233 253 - -
Gso6g0446 359 PANTHER RWP-RK DOMAIN PROTEIN 39 343 - -
Gso6g0446 359 MobiDBLite consensus disorder prediction 50 69 - -
Gso6g0446 359 MobiDBLite consensus disorder prediction 220 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0446 Gso-Chr6 4132176 4134192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0446 243 318 NLP Transcription Factor Family AT3G59580 31.579 9.02e-07 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Gso6g0446 RWP-RK 3.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0446 - - gmx:102669711 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0469 4 4419561 4421602 Gso6g0446 6 4132176 4134192 GST