Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0442 ATGACAGATAAAAATCCAAGACCAGCAGATTCAGCTGACAATTATGTCACCAACCAATGGCCTTTGGAGCTCTCTGAGCACTTGAATTTTGATGATGATCAATGGCTAGACGATGACCCGGATTCATTTGTTTCGGGGCATGCCTTCAGCCATAACAATCAAGCCAATGAAGTTGGTGGCTTTGGAGGAAGTGGCACCCACTTTGAAGAGTCTTCTAGCAGAGACGTTGGCAATGAACGTGAGAAGAAGGAAGTCAGGGATAGAGTTGCATTCAAAACAAAGTCAGAGGTTGAAATACTGGACGACGGCTCCAAGTGGAGGAAGTACGGAAAGAAAATGGTGAAAAACAGCCCCAATCCAAGGAACTACTATAGGTGCTCAGTGGACGGATGGCAGGTCAAAAAGAGAGTTGAAAGAGATAAGGATGATCCAAGGTTTGTAATAACAACCTACGAAGGAATCCATACTCACCCAAGTTATAGCTAA 486 0.4424 MTDKNPRPADSADNYVTNQWPLELSEHLNFDDDQWLDDDPDSFVSGHAFSHNNQANEVGGFGGSGTHFEESSSRDVGNEREKKEVRDRVAFKTKSEVEILDDGSKWRKYGKKMVKNSPNPRNYYRCSVDGWQVKKRVERDKDDPRFVITTYEGIHTHPSYS* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0442 161 Pfam WRKY DNA -binding domain 101 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0442 161 ProSiteProfiles WRKY domain profile. 95 160 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gso6g0442 161 SUPERFAMILY WRKY DNA-binding domain 93 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g0442 161 MobiDBLite consensus disorder prediction 72 87 - -
Gso6g0442 161 Gene3D WRKY domain 87 153 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gso6g0442 161 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 1 159 IPR044810 GO:0003700
Gso6g0442 161 MobiDBLite consensus disorder prediction 46 87 - -
Gso6g0442 161 MobiDBLite consensus disorder prediction 46 71 - -
Gso6g0442 161 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 1 159 - -
Gso6g0442 161 SMART WRKY_cls 100 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0442 Gso-Chr6 4107248 4108774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0442 2 159 WRKY Transcription Factor Family AT5G26170 52.000 9.31e-47 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gso6g0442 WRKY 2.1e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0442 - - gmx:100808823 340.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0464 4 4386564 4388006 Gso6g0442 6 4107248 4108774 GST