Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0420 ATGCACACTTCCACTTTGCACATCAACAATAGCGCCACCAAAGACCGCACATTACAAAAATGTCACAATGCAAGGACTTGTAAAAGTACTCCCGGTCAAGGACAACTAAAGCTCTTCGGAGTGCAACTAGATGTTTCTTCTTCTTCATCATCCTCGAATTCTTTTTCATCATCATCACCTTCATATTCTGGCATGAAAAGAAGTTTTAGCACGAATTACTTGTTGTCTTCATGGGCATCTTCATCTGTACCCTCCTCCTTTTCCTCGCCTTCCCTGCTTGGTGCAAATGAAAATTCAGATAGTTACTTACTCAATGCCAATAGCCTCATATCAACAATTCAAGACACAAAAAAAGGTGTCCCGTGGACAGAGGAGGAGCATCGGATATTTCTTATAGGGCTTGAGAAGCTGGGGAAGGGAAACTGGAGAGGCATATCTAAAAGTTTTGTGACAACAAGAACACCTACCCAAGTGGCTAGTCATGCACAAAAATATTTTCTCCGTCAATCTCAGAATAGCTTCAATAAAAGAAAACACCGCCCTAGTCCCAACCTGTTCGATAATTGGCTTTCGCATCGTCCTCATTCATTGCTGAACTGGGTTACCACTTTAACTTCAACTAATAATTGCACTGTTCAGAGCGCGAGCCCAGATTTAGAACTCAAACTTGCAACTCCCACGCCATTGGAGCTATCAGTAGCAGATGCATAG 711 0.4248 MHTSTLHINNSATKDRTLQKCHNARTCKSTPGQGQLKLFGVQLDVSSSSSSSNSFSSSSPSYSGMKRSFSTNYLLSSWASSSVPSSFSSPSLLGANENSDSYLLNANSLISTIQDTKKGVPWTEEEHRIFLIGLEKLGKGNWRGISKSFVTTRTPTQVASHAQKYFLRQSQNSFNKRKHRPSPNLFDNWLSHRPHSLLNWVTTLTSTNNCTVQSASPDLELKLATPTPLELSVADA* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0420 236 Gene3D - 122 171 - -
Gso6g0420 236 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 117 169 IPR006447 GO:0003677
Gso6g0420 236 Pfam Myb-like DNA-binding domain 121 166 IPR001005 -
Gso6g0420 236 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 22 191 - -
Gso6g0420 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 170 IPR017930 -
Gso6g0420 236 ProSiteProfiles Myb-like domain profile. 114 166 IPR001005 -
Gso6g0420 236 SMART sant 118 168 IPR001005 -
Gso6g0420 236 CDD SANT 121 166 IPR001005 -
Gso6g0420 236 PANTHER TRANSCRIPTION FACTOR KUA1 22 191 - -
Gso6g0420 236 SUPERFAMILY Homeodomain-like 116 170 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0420 Gso-Chr6 3892012 3893728 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso6g0420 Myb_DNA-binding 4.5e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0420 - - gmx:100806176 390.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0438 4 4138085 4140082 Gso6g0420 6 3892012 3893728 GST