Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0418 ATGGAGAGTGATATGTACACTGCTGCACTGGACATTTCTGGGCGAGAGGCTACAGTAATAGATGAAATTTCCCAACATTCCGCCTCAAATCCTCTCATTCAGTGCTATTCACTTGACCTTAACAACCAATCCCACATCATAAGTGGAATTTCAATGCTTTCTGGAGAGCAAGGTGAACCCATAAATAATGTCCATGCTGATGCTTGCTTCATTAATCCTTCAATTATTGCTGACTCTAGTCCACTAGTTATATCACAAGGAAAGACTATTGTGGCAGTGGGAGATGCCTCAAATCCTATGGAGAACACTGAGCTTCAAGAGCATTTAGCTGGAGGAATGCCAATCACTCCCTCTTCACTTGCTGCCATTCTTGCTGCTAGAACTGGTCTTGAAGAAAATTTGGGGAACTCATCATCAGCCTTGCCTCCCTCCCTCTGCTCAATGGGGGCACTGGGGGCATTCTTCAACAATTTGCAAGAGATTGATGGAACTTGTCAGCCTTATCCTTTTATAGCAAATCTGGATCAAAATGAATGGCCATCATCAAATGTCGCAAACATGGCCAATCATGCTTACCATTCCTCACACTTTAGTAAGGAACTTTCTCTAAGTCTCGCAACATCGACAACCGCGGGAATGTGCTCGGAGGTGAGTTGCTCTAATGTGACCCCATGCATGAATGGAACCATGTCAGGGTTGGAGCAAGCCTCTTGCAGTAGTAGTAGGGAACTTTCTATGAATTTGGGTGGTAATAAGTATGTAGAGTTTTCACCAGAAGTACTGGAATCAAGATATCTCGTTGGGATTCAAGAGATACTTGCTCAAATTGGAAGATATTCATTTGAAAATCTAGAACAGTTGAATTATTCTGCTGGTAACCATAGATCAGGTGGAAACAAGTCAAGTTCAGCCTTCCCACCCAAGAGAAGGATATTGATAGATCACAATGCAAATTCTACATATGAAGCTCATGCAGAGTCTCCATTGCAAAGGCATGCTGCTGAATCAAAGAAATCCCAACTCCTGACACTTCTACAACTGGTGGACAATCGATATAGCCAATGCTTGGATGAGATACACACTGTTGTATCTGCATTCCAGGCCGCTACGGAGCTGGACCCTCAAATACATGCACATTTTGCTCTTCAAACCATCTCTATCCTTTACAGGGACCTAAGAGAGAGGATCAGCAATTACATTCTAGCCATGGGATCAAATTTCAACAACTCGTGCTCAGAAGAGAATGAATGGTCCGTTGAAACTTCATTCCTTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGAAAAGATCAGTTGTGGAGGCCCCAAAGAGGGTTGCCAGAAAGATCCGTCTCGGTTCTACGGGCTTGGATGTTTCAGAATTTCCTGCACCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGGTTGACGAGAAGTCAGGTATCCAATTGGTTTATAAATGCTCGTGTTCGGCTGTGGAAACCTATGATTGAAGAGATGTATGCTGAAATGAATAAAAGAAAGGCCTGTCGAAATGAAGAAGGAATGCAGAGCAACCACGGAACTAGGATAAGCACGACCAATGAAAGGTTTAATCAGTGTCAACTATAG 1626 0.4311 MESDMYTAALDISGREATVIDEISQHSASNPLIQCYSLDLNNQSHIISGISMLSGEQGEPINNVHADACFINPSIIADSSPLVISQGKTIVAVGDASNPMENTELQEHLAGGMPITPSSLAAILAARTGLEENLGNSSSALPPSLCSMGALGAFFNNLQEIDGTCQPYPFIANLDQNEWPSSNVANMANHAYHSSHFSKELSLSLATSTTAGMCSEVSCSNVTPCMNGTMSGLEQASCSSSRELSMNLGGNKYVEFSPEVLESRYLVGIQEILAQIGRYSFENLEQLNYSAGNHRSGGNKSSSAFPPKRRILIDHNANSTYEAHAESPLQRHAAESKKSQLLTLLQLVDNRYSQCLDEIHTVVSAFQAATELDPQIHAHFALQTISILYRDLRERISNYILAMGSNFNNSCSEENEWSVETSFLQKQWALQQLKRKDQLWRPQRGLPERSVSVLRAWMFQNFLHPYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMNKRKACRNEEGMQSNHGTRISTTNERFNQCQL* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0418 541 SUPERFAMILY Homeodomain-like 442 509 IPR009057 -
Gso6g0418 541 CDD homeodomain 440 501 IPR001356 GO:0003677
Gso6g0418 541 SMART prehox3 254 398 IPR006563 -
Gso6g0418 541 MobiDBLite consensus disorder prediction 520 541 - -
Gso6g0418 541 Pfam Associated with HOX 260 397 IPR006563 -
Gso6g0418 541 Pfam Homeobox KN domain 457 496 IPR008422 GO:0003677|GO:0006355
Gso6g0418 541 Gene3D - 443 522 - -
Gso6g0418 541 ProSiteProfiles 'Homeobox' domain profile. 437 500 IPR001356 GO:0003677
Gso6g0418 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 10 157 - -
Gso6g0418 541 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 163 535 - -
Gso6g0418 541 MobiDBLite consensus disorder prediction 518 541 - -
Gso6g0418 541 PANTHER HOMEOBOX PROTEIN ATH1 10 157 - -
Gso6g0418 541 PANTHER HOMEOBOX PROTEIN ATH1 163 535 - -
Gso6g0418 541 SMART HOX_1 440 504 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0418 Gso-Chr6 3879814 3883151 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0418 200 513 Homeobox Transcription Factor Family AT4G32980 56.289 6.89e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Gso6g0418 POX 7.1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0418 - - gmx:100806862 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0436 4 4124317 4128346 Gso6g0418 6 3879814 3883151 GST
Gso17g1950 17 38666036 38670504 Gso6g0418 6 3879814 3883151 PCT
Gso6g0418 6 3879814 3883151 Gso17g1950 17 38666036 38670504 PCT