Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0407 ATGATCCCAAACGTTGAAATCCCTCACTGGGACGCCGACGGAGGAGGACCACTCTCTCCGTTCATCTCTTCTTCTTCCAATGCTGACAAGTGCTCATTATTATTCTCCTCCGACCATTTCCGAATGTTCCAGTTCAAGGTCCGGATCTGTCCACGTGGCAGGTCCCACGATTGGACGGAGTGTCCCTACGCCCACCCTGCCGAGAAGGCTCGCCGCCGTGACCCCCGCAAGTACCACTACTCCGGCACCGCCTGCCCCGATTACCAGAAGGGGAACTGCAAGAGGGGCGACACTTGTCAGTTCTCGCACGGCGTCTTCGAATGCTGGCTCCATCCTTCTCGCTACCGGACCCACCTCTGCAAAGACGGAACCACTTGCCGCCGCAGAGTCTGCTTCTTCGCTCACACCACCGAACAACTCCGCCTCGTAGTAACGGATTCATCATCGTCCTCCTTTGTTTCCTCTCCCACTTCGGTCCTCAACTCTTCGTCCTTCTCCGATTCTTCGCCGTACAGCTTCGTGCGCGAAATAGTTAACTCAACGCGGAATGTTAAAATCGAGGATTCGGGTTTGACCCGTTGCGTGTTTGGGTCGCCACGTGGCGGGTTTTTAAGTGTGAATGGGTGCGAGGAGGAGCCTGCTATGGAGAGGGTGGAATCTGGGAAAGACATTAGAGCGAGAATCTATGCCAAGCTTAGTAGGGAGAACACGATTGGAGCCTCTGACCCTGACATTGGATGGGTTTCGGAACTCGTCAAATGA 762 0.5499 MIPNVEIPHWDADGGGPLSPFISSSSNADKCSLLFSSDHFRMFQFKVRICPRGRSHDWTECPYAHPAEKARRRDPRKYHYSGTACPDYQKGNCKRGDTCQFSHGVFECWLHPSRYRTHLCKDGTTCRRRVCFFAHTTEQLRLVVTDSSSSSFVSSPTSVLNSSSFSDSSPYSFVREIVNSTRNVKIEDSGLTRCVFGSPRGGFLSVNGCEEEPAMERVESGKDIRARIYAKLSRENTIGASDPDIGWVSELVK* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0407 253 Gene3D - 78 142 - -
Gso6g0407 253 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 24 253 - -
Gso6g0407 253 SMART c3hfinal6 79 105 IPR000571 GO:0046872
Gso6g0407 253 SMART c3hfinal6 114 137 IPR000571 GO:0046872
Gso6g0407 253 ProSiteProfiles Zinc finger C3H1-type profile. 80 106 IPR000571 GO:0046872
Gso6g0407 253 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 84 104 IPR000571 GO:0046872
Gso6g0407 253 SUPERFAMILY CCCH zinc finger 78 108 IPR036855 GO:0046872
Gso6g0407 253 PANTHER UNKEMPT FAMILY MEMBER 24 253 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0407 Gso-Chr6 3807324 3808667 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0407 29 161 C2H2 Transcription Factor Family AT5G12850 59.028 2.60e-55 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso6g0407 zf-CCCH 2.5e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0407 - K23048 gmx:100786368 515.383