Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0398 ATGGGTGATCTTGAAAATGCATTGGGGCTTCAAAGTGTTTCAGAAATGACAGTTAGTTCTGCCTCTATGGCTATGCCTTCAGGCGCGGCTAATCCTTTTCTTTCTTCTTCCGCTTGGGATCCACTTGTTCCTTTGAGTCAAACTTTTGGAGGCTCTCTCGTGGTTTCTCATAGTGAGTTTGCCCATTCAGCTTACCCTTTTGTTATGAACTGTGACTCTCACTTTGTTCAATATGTATCTGACTCAAATTTTGAGCACATGGCCCTTAAGGTTCCCTCCATTGGCCAAACGGGTTGTTATGATATAGATAATAACATAGGGTATCTGCCAAATCATAATCCGAGTAATGAGTCTGGAATAGAAAGGAATCAATTAAATAATGAGAAATCTAAGCACGAAGATTCTACTTCTGAAGAAGGAGCTGCACCTGGTGAACATAAAAGAAAACGAGGACTTTACTATAATGTTACTTTCAGTTCAAATAAGAATGCTGAGGGGGAAACACTTCAAAATTCTTCTGGGAAGAGCTGTGATGATGTGAAAGAACAATGTGAAAAGAAACCAAAATTTGCACAAAATAGTGCAGCTAACTTATGTGGAAAGCAATTGCTGAAGCACAAGAAAGATGACTCCGAGAGTGAAGAAGCTCCCAAAGAAAATTTCATTCATGTGAGAACCCGAAGAGGTCAAGCTACAAACAGTCACAACCTTGCAGAAAGGGTAAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTGCTTCAAGAACTTGTTCCAGGATGCGAAAAGATAACGGGTAAAGCGGTAATGCTGGATGAGATTATAAACTATGTGCAATTACTGCAACAACAGGTTGAGTTTTTGTCTATGAAACTTGCCACTGTAAACTCAATTGAATTTTAA 900 0.3944 MGDLENALGLQSVSEMTVSSASMAMPSGAANPFLSSSAWDPLVPLSQTFGGSLVVSHSEFAHSAYPFVMNCDSHFVQYVSDSNFEHMALKVPSIGQTGCYDIDNNIGYLPNHNPSNESGIERNQLNNEKSKHEDSTSEEGAAPGEHKRKRGLYYNVTFSSNKNAEGETLQNSSGKSCDDVKEQCEKKPKFAQNSAANLCGKQLLKHKKDDSESEEAPKENFIHVRTRRGQATNSHNLAERVRREKISERMRLLQELVPGCEKITGKAVMLDEIINYVQLLQQQVEFLSMKLATVNSIEF* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0398 299 Gene3D - 227 297 IPR036638 GO:0046983
Gso6g0398 299 MobiDBLite consensus disorder prediction 124 151 - -
Gso6g0398 299 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 280 IPR011598 GO:0046983
Gso6g0398 299 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 11 295 IPR024097 GO:0006355
Gso6g0398 299 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 227 294 IPR036638 GO:0046983
Gso6g0398 299 MobiDBLite consensus disorder prediction 110 151 - -
Gso6g0398 299 CDD bHLH_AtBPE_like 220 296 - -
Gso6g0398 299 Pfam Helix-loop-helix DNA-binding domain 233 281 IPR011598 GO:0046983
Gso6g0398 299 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 11 295 - -
Gso6g0398 299 SMART finulus 236 286 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0398 Gso-Chr6 3694863 3702050 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0398 30 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 44.195 9.89e-53 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso6g0398 HLH 3.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0398 - - gmx:102662483 598.586