Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0396 ATGAATTTCAAGATGGATTCCGATAGAGCGAAGCTGTTCGTAGGAGGCATTTCTCGCGACACCACCGAAGACGTTCTCAAACTCCACTTCGCCAAGTACGGCGTCGTTTCCGACTCCACAATATCCGTAGACCGCACCACCCGAAGCCCTAGAGGTTTTGGCTTTGTCACTTTCTCCGACCTCTCCGCAGCTGATAAAGCCCTCCAAGACACCCACGTCATCCTCGGAAGAACGGTAGAAGTGAAAAAAGCGATTCCCAGGAGTGAACAACATCAACACCAAAACCAATTACAGAGTAGAGTGGGTGGTTATTATAATAATAATAATAATAATAATAATAATTATAGTAATGACTGTAGCAGTGACTACAACGTTAGGACTAAAAAGATTTTTGTTGGGGGTTTACCTGCTGGTATATCTGAGGAGGAGTTTAAGAACTACTTTGAGAGGTTTGGTCGGATTACCGATGTCGTGGTGATGCAGGACAGTGTAACTCACCGGCCCAGGGGATTTGGGTTTATCACTTTTGAGTCCGAGGATTCCGTTCAAAACGTTATGGTGAAGAGTTTTCATGACTTGAATGGTAGACAGGTGGAGGTGAAGAGGGCTGTTCCGAAAGAAGGGAACCATGGCTATGATGGGTTTAGTAAATTCAGAAATAAGAGTGAAAGAGGAGTTCCTAAGAGTTTGCCTCCTTATAGTCCTAGGAATATGTTCCCGGGTTTCTCACCTTCGCCGTGGTATAGTGGTGATGGAGTATATGCATATGGGTCTAATGCGTATGGTTGCTGGTACCCTGTGGGTGGGTATGGGGGGAATGGTTATGCGGTTTTGTGTGATGCTCCTAGGAACTTCTGGTATGGGCCAATGATGACTGGTCCTCAGGCATGTCAGGTGCCTTACACTAGTGCTGTTCCGGATGTTGTGTATGTGGGGGGTAGGATTGGAGTAGTAGGTAGTGGTGCTGGATCTTGGGGGTACAGTGGCATTCTTGGACCTGCAACAAATTTGAAATTTGATCAAGCTTTTAATGCCAATGGATTTGTTCCTGGCAATGTGACATCACTTCATGGTGTACAGCAGGATGTTATCGACTCGTCAAGTCTTAAAGGAAGCAATGGTGGAATTTCTAGTTGA 1137 0.4556 MNFKMDSDRAKLFVGGISRDTTEDVLKLHFAKYGVVSDSTISVDRTTRSPRGFGFVTFSDLSAADKALQDTHVILGRTVEVKKAIPRSEQHQHQNQLQSRVGGYYNNNNNNNNNYSNDCSSDYNVRTKKIFVGGLPAGISEEEFKNYFERFGRITDVVVMQDSVTHRPRGFGFITFESEDSVQNVMVKSFHDLNGRQVEVKRAVPKEGNHGYDGFSKFRNKSERGVPKSLPPYSPRNMFPGFSPSPWYSGDGVYAYGSNAYGCWYPVGGYGGNGYAVLCDAPRNFWYGPMMTGPQACQVPYTSAVPDVVYVGGRIGVVGSGAGSWGYSGILGPATNLKFDQAFNANGFVPGNVTSLHGVQQDVIDSSSLKGSNGGISS* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0396 378 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 5 375 - -
Gso6g0396 378 SUPERFAMILY RNA-binding domain, RBD 6 114 IPR035979 GO:0003676
Gso6g0396 378 Gene3D - 125 212 IPR012677 -
Gso6g0396 378 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 5 375 - -
Gso6g0396 378 Gene3D - 2 120 IPR012677 -
Gso6g0396 378 SMART rrm1_1 11 82 IPR000504 GO:0003723
Gso6g0396 378 SMART rrm1_1 129 201 IPR000504 GO:0003723
Gso6g0396 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 79 IPR000504 GO:0003723
Gso6g0396 378 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 196 IPR000504 GO:0003723
Gso6g0396 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 128 205 IPR000504 GO:0003723
Gso6g0396 378 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 86 IPR000504 GO:0003723
Gso6g0396 378 SUPERFAMILY RNA-binding domain, RBD 124 214 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0396 Gso-Chr6 3664775 3666701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0396 6 266 Eukaryotic Initiation Factors Gene Family AT3G16380 26.792 9.50e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0396 K14411 - gmx:100816822 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0415 4 3828557 3830234 Gso6g0396 6 3664775 3666701 GST