Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso6g0388 ATGCTTCTTTACCAGCCACTCAAAGAAGAGGTAGAAACCACCATCATGATGAAGGGCGACAACGTTTTGGATCTGAAAACATTAATTGAGGAGCTTGAGTCATCAACAATTGAAGTCCCTTCCGTTTTCATCTGCCCAATTTCACTTGAGCCAATGCAAGACCCGGTGACCCTTTGCACGGGACAAACCTACGACCGTTCCAACATCCTCAAATGGTTCTCCCTCGGTCACAACACGTGTCCCACGACAATGCAAGAGCTTTGGGATGATTCTGTCACACCAAACACCACTCTTTACCACTTCATACTCTCTTGGTTCTCGCAGAAGTATTTGGTCATGAAGAAGAAGCTCGAGGACGTGCAAGGCACAGCCTTGGAGCTCTTGGACACGTTAAAGAAGAAGGTAAAGGGTCAAAATAGAGTTCGAGCTCTCAAAAAACTTCGCCAACTCGTTGATTCCCACGTGTCCACGAGGAAAACCGTTGAGGAAAATAATGGTTCTTCTTTGATTTCTTCATTGTTGGGTCCTTTCACTTCCCACGCTGTTGGGTCCGAAGCTATTGGGATTCTCGTGAATTTGGAGTTGGGTTCGGAGTTGAAGAGAAATCTCATGCACCCCGCGAAGGTGTCGTTGTTGGTTGACATCATGAACGAGGGAACAATTCAGACAAAGATGAATTGTGCCAAATTGATTCAAACGTTGTTGGTCGAAGGTAACCCTTCCGAGACAGTTGTTTTATCAAGTTTGAGTCTTTTGGTTGGGGTGTTGAGGTTAGTGAGAGATAAGAAACACCCAACTAGTGTTTTAACCGGACTCATATTACTCAAAATTGTATGTTCACGTGAACCGGTTAGAAGCTCGATTATAAGCATAGGAGCGGTGCCTCAATTGATTCAGCTTTTACCCACTTTGAATAACGAGTGTTTGGAGATAGCACTTCATATTCTTGAGGTTTTGTCAACACTTCCTGAAGGTAGATTGGCTTTGAAAGAGTGTCCAAATATTATTCCCAATGTGGTCAAGTTGTTGATGAGAGTTTCGGAGAGTTGCACACAATTTGCATTGTCGATATTGTGGGCTATTTACAAGCTTGCCCCGGAGGAATGTGCTTCGAAAGCTGTGGAGGCAGGGTTGGCGGCGAAGCTACTACTAGTAATTCAGAGTGGTTGCAACCCTGTGTTGAAGCAGAAATCTACCGAGTTTTTGAAAATGTGTAGTCTAGATTACTCTACTAGTATTTTTATTTCCAAATGTATGCTTACTGCAACAATACAATGA 1278 0.4358 MLLYQPLKEEVETTIMMKGDNVLDLKTLIEELESSTIEVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNTTLYHFILSWFSQKYLVMKKKLEDVQGTALELLDTLKKKVKGQNRVRALKKLRQLVDSHVSTRKTVEENNGSSLISSLLGPFTSHAVGSEAIGILVNLELGSELKRNLMHPAKVSLLVDIMNEGTIQTKMNCAKLIQTLLVEGNPSETVVLSSLSLLVGVLRLVRDKKHPTSVLTGLILLKIVCSREPVRSSIISIGAVPQLIQLLPTLNNECLEIALHILEVLSTLPEGRLALKECPNIIPNVVKLLMRVSESCTQFALSILWAIYKLAPEECASKAVEAGLAAKLLLVIQSGCNPVLKQKSTEFLKMCSLDYSTSIFISKCMLTATIQ* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso6g0388 425 Gene3D - 117 419 IPR011989 -
Gso6g0388 425 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 17 424 - -
Gso6g0388 425 CDD RING-Ubox_PUB 43 85 IPR045210 -
Gso6g0388 425 SUPERFAMILY RING/U-box 27 109 - -
Gso6g0388 425 Pfam U-box domain 39 109 IPR003613 GO:0004842|GO:0016567
Gso6g0388 425 PANTHER WDSAM1 PROTEIN 17 424 IPR045185 GO:0061630
Gso6g0388 425 SMART Ubox_2 42 105 IPR003613 GO:0004842|GO:0016567
Gso6g0388 425 ProSiteProfiles U-box domain profile. 38 112 IPR003613 GO:0004842|GO:0016567
Gso6g0388 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 116 IPR013083 -
Gso6g0388 425 SUPERFAMILY ARM repeat 120 401 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso6g0388 Gso-Chr6 3597188 3598970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso6g0388 20 425 U-box Gene Family AT3G49810 63.054 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso6g0388 - - gmx:100808281 803.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso4g0409 4 3755914 3757556 Gso6g0388 6 3597188 3598970 GST